DY271199

Overview
NameDY271199
Unique NameDY271199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 73/156 (46.79%), Postives = 93/156 (59.62%), Query Frame = 3
Query:   33 VLRSHSTMVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 500
            V+R+ + + KA A    TE + GT+ F Q G     ++GS+SGL  G HGFH+H  GDT NGC+S G H+NP    HG P+D NRH                 +V D+   LSG  SIIGR+VV+H   DDLG+G  + SKTTGNAG R+ACG IG
Sbjct:   21 VIRARAYIFKAEAGKIPTELI-GTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.308e-31
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 3
Query:   57 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            +KA+ ++ G     G + F Q   D P +++G L  L  G HGFHVH  GDT+NGC S G HFNP  + HG P+   RH               T   + DN I L GP SI+GR++VVH D DDLG G H LSKTTGN+GGR+ CGIIG+
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIGV 149          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 3
Query:   63 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            AVA+LGG   V+G V F Q       + G++ GL+PG HG HVH  GD TN C S G HFNP G  HG P+D +RH              A F + D Q+ +     +IGR++++    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.207e-30
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 3
Query:   63 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            AVA++ G+  V+G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++VV    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 69/152 (45.39%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 503
            KAVAVL  ++ V G + F Q      TT+ G+++GL PG HGFH+H  G   NGC S   H+NP  K HG P +  +H              A   ++ N I LSGP S+IGR++VVHA+PDDLGKG     E S  TGNAG R+ C IIG+
Sbjct:   41 KAVAVLK-SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIGI 191          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 66/145 (45.52%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   63 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            AVA+LGG+  V+G V F Q       + G++ GLKPG HG HVH  GD T  C S G HFNP G  HG P+D +RH              A F + D  + +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   63 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 497
            AVA+L G   ++G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30
Identity = 72/149 (48.32%), Postives = 87/149 (58.39%), Query Frame = 3
Query:   57 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPG-PHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 500
            V A+AVL G   VKGTV F +E      +S  +SGLKP   HGFHVH  GD T+GC S   HFNP G  HG P+ + RH              A ++  D+ I L G  +IIGRA+VVHAD DDLG GG+  S  TGNAG R+ C +IG
Sbjct:   35 VSAIAVLEGP--VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 72/152 (47.37%), Postives = 83/152 (54.61%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            MV+AVAVL G   V G V+F Q + +   +V   L G       GFH+H  GD TNGC S GPHFNP GK HG      RH                 T  D+ I L G NSIIGR +V+HA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:    1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 68/146 (46.58%), Postives = 81/146 (55.48%), Query Frame = 3
Query:   54 MVKAVAVLGGTEG-VKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVA 485
            MVKAV VL GT G V GTV F QE D  P  ++G + GL PG HGFHVHA GD TN               H  P D++RH              A   + D  + L+GP SIIGR +V+H   DDLGKGG++ S  TGNAGGR+A
Sbjct:    1 MVKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
The following BLAST results are available for this feature:
BLAST of DY271199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODE_CAEEL1.001e-3146.79Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODC_NPVOP1.308e-3147.02Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
CCS_HUMAN3.221e-3045.52Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT4.207e-3045.52Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODE_DIRIM7.176e-3045.39Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
CCS_PIG7.176e-3045.52Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_MOUSE7.176e-3044.83Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODC_PBCV19.373e-3048.32Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC_SCHPO6.075e-2947.37Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_LAMCR1.267e-2646.58Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YD03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271199 ID=DY271199; Name=DY271199; organism=Citrus clementina; type=EST; length=660bp
AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGC
ACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGG
AACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAA
GCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTT
GGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGC
TGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACT
TAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTT
GACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGT
TGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGA
GCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGC
CTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATA
TGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCA
AGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGA
ATGGTTTTCG
back to top