DY271199

Overview
NameDY271199
Unique NameDY271199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.770e-63
Identity = 115/152 (75.66%), Postives = 126/152 (82.89%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAVAVL  +EGV GT  F+Q G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 4.924e-63
Identity = 114/152 (75.00%), Postives = 125/152 (82.24%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            M K V VL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.097e-62
Identity = 112/152 (73.68%), Postives = 125/152 (82.24%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            M K VAVL  +EGVKGT+ F+ EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.444e-62
Identity = 109/152 (71.71%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            ++KAV VL G   VKG V F+QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P D+NRHA            T  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG++GLQG
Sbjct:    3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 3.192e-62
Identity = 115/152 (75.66%), Postives = 125/152 (82.24%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            M K VAVL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HG PED NRHA            TATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.529e-61
Identity = 112/152 (73.68%), Postives = 121/152 (79.61%), Query Frame = 3
Query:   54 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 509
            MVKAV VL G+ GV G + F+QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHG PEDE RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG IGLQG
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.074e-53
Identity = 96/148 (64.86%), Postives = 113/148 (76.35%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            KAVAVL GT  V+G V+ +QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HG PEDENRHA             A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   70 KAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.619e-53
Identity = 98/148 (66.22%), Postives = 112/148 (75.68%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            KAVAVL GT  V+G V+ +QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 99/165 (60.00%), Postives = 114/165 (69.09%), Query Frame = 3
Query:    9 FIFLPPRGVLRSHSTMVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            F    P   L   S   KAVAVL GT  V+G V+ +Q+  GPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG+IGL
Sbjct:   49 FAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
BLAST of DY271199 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.486e-51
Identity = 97/148 (65.54%), Postives = 110/148 (74.32%), Query Frame = 3
Query:   60 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 503
            KAVAVL GT  V+G V+ SQE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HG PED+ RHA             A  T+VD QIPLSGPN++IGRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   62 KAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          
The following BLAST results are available for this feature:
BLAST of DY271199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC1_SOLLC3.770e-6375.66Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC1_BRAJU4.924e-6375.00Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC1.097e-6273.68Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_PINSY2.444e-6271.71Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC2_BRAJU3.192e-6275.66Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PANGI3.529e-6173.68Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS2.074e-5364.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL4.619e-5366.22Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_ARATH8.712e-5260.00Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_VITVI1.486e-5165.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271199 ID=DY271199; Name=DY271199; organism=Citrus clementina; type=EST; length=660bp
AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGC
ACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGG
AACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAA
GCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTT
GGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGC
TGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACT
TAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTT
GACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGT
TGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGA
GCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGC
CTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATA
TGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCA
AGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGA
ATGGTTTTCG
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