DY271203

Overview
NameDY271203
Unique NameDY271203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.227e-53
Identity = 101/168 (60.12%), Postives = 129/168 (76.79%), Query Frame = 3
Query:  162 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A A  EMLQDVCVADL++ +KVNG+ CK     +  DF+   LA  AATN + GS VT ANV+ +PGLNTLG+S++RIDYAP G+NPPH HPRA+EI+FVLEGQL VGF TTA  L++K++ KG+ F FP+GL+HFQKN  N PASV+A F+SQL GTQ++  +LF +
Sbjct:   18 AMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA 185          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.959e-51
Identity = 101/169 (59.76%), Postives = 127/169 (75.15%), Query Frame = 3
Query:  162 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAAT-NNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A AD  MLQD CVADL++ +KVNG+PCK  A  +  DF+   LA  AAT N++ GS VT ANV+ +PGLNTLGVS++RIDYAPGG+NPPH HPRA+E +FVLEG+L VGF TT   L+SK + KG+ FVFP+ L+HFQ+N    PASV+A F+SQL GTQ +  +LF S
Sbjct:   20 ALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGS 188          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.211e-46
Identity = 99/179 (55.31%), Postives = 126/179 (70.39%), Query Frame = 3
Query:  165 AADPEMLQDVCVAD---LTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAA--TNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAP-GGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP+MLQD+CVAD   L  P++VNGFPCK  AN +  DFF   L KPA   + N  GS VTAA V+ IPGLNTLGVS+AR+DYAP GG NPPH+HPRATEI+FV +G L+VGF        ++ L+++ + KG  FVFPRGL+H++++ G  PA  I+ F+SQL GTQ  A  LF S+
Sbjct:   27 AGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSS 205          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 89/165 (53.94%), Postives = 108/165 (65.45%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            ++D + LQD CV DL +   +NGFPCK+  S  DFF   L  P  T+N  G TV  ANV T PGLNTLG+S+  ++ APGG+NPPH HPRATE+  V+EG + VGF +T N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G   +  TLF S
Sbjct:   27 SSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 88/165 (53.33%), Postives = 110/165 (66.67%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            ++D + LQD CV DL +   +NGFPCK++ S  DFF   L  P  T+   G  V+ ANV T PGLNTLG+S+  +++APGG+NPPH+HPRATE   V+EG + VGF TT N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G+  +  TLF S
Sbjct:   27 SSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.814e-44
Identity = 99/171 (57.89%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVADL SP++VNGF CK   N S  DFF +  L KP  TNN  GS VT  NV  +PGLNTLG+S+AR+D+AP G+NPPHTHPRATEI  VLEG L VGF T+   N L+SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGS 194          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 94/171 (54.97%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP  LQD CVAD+ SP++VNGFPCK   N +  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  +SQ  G   IA  +F ST
Sbjct:   23 AFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGST 193          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 93/170 (54.71%), Postives = 112/170 (65.88%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A DP  LQD CVAD+ SP++VNGFPCK     +  DFF+  K   P +T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  NSQ  G   IA  +F S
Sbjct:   23 AFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGS 192          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD+CVAD  S ++VNG  CK   + +  DFF   L     T N  GS VTA NV  +PGLNTLG+SLARIDYA  G+NPPHTHPRATEI+ VLEG L VGF T+   N L +K I KG+ FVFP+GLVHFQ N G   A  I   +SQ  G   +A  +F S
Sbjct:   28 ASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGS 196          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41
Identity = 91/169 (53.85%), Postives = 107/169 (63.31%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP +LQD CV D  S ++VNGFPCK   +    DFF   L     T N  GS VT  NV  IPGLNT+GVSL RIDYAP G+NPPHTHPRATEI  VLEG L VGF  +   N L +K + KG+ FVFP+GLVHFQ NNG   A  +A  +SQ  G   +   +F S
Sbjct:   28 ASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGS 196          
The following BLAST results are available for this feature:
BLAST of DY271203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL25_ARATH1.227e-5360.12Probable germin-like protein subfamily 2 member 5 ... [more]
GL23_ARATH1.959e-5159.76Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL14_ORYSJ7.211e-4655.31Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH3.029e-4453.94Germin-like protein subfamily T member 1 OS=Arabid... [more]
GLT2_ARATH6.749e-4453.33Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL82_ORYSJ8.814e-4457.89Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ4.837e-4254.97Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ1.077e-4154.71Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL23_ORYSJ4.094e-4154.44Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL22_ORYSJ4.094e-4153.85Putative germin-like protein 2-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271203 ID=DY271203; Name=DY271203; organism=Citrus clementina; type=EST; length=662bp
CTCTCTCTCTCTCTTTCTCCATCTCTATCTTTTCTTCTTTCTTTATCTTC
GCCTGCAGCAATAACAAGATCATAATTGAACTTACTTTTGTAACCATGGC
TGCTGCTGCTGCTGGTGCTTTGACACTTTTTGTTGTCACTGTTGCTGTGA
TCTTGAACACTGCTGCTGCTGATCCCGAAATGCTTCAAGATGTTTGTGTG
GCAGACCTCACTTCCCCTATTAAAGTCAATGGGTTCCCCTGCAAAGCAAA
CTTTTCAGAGATGGACTTTTTCTCAGACAAATTAGCAAAGCCAGCAGCCA
CAAACAACACGTTTGGTTCAACAGTAACAGCAGCCAATGTCCAAACAATC
CCAGGCCTAAATACTCTTGGTGTCTCACTCGCACGCATTGACTATGCCCC
CGGCGGCATAAACCCGCCGCACACGCACCCCCGTGCCACCGAGATCGTCT
TTGTCCTCGAGGGTCAACTCGACGTAGGCTTCTTCACTACTGCCAACGTT
TTGGTATCAAAATCCATCAAAAAGGGTGAAAACTTCGTGTTTCCAAGAGG
GTTGGTGCATTTCCAGAAGAACAATGGAAATGTCCCTGCTTCTGTTATTG
CTGGCTTTAATAGCCAGCTGCAGGGGACTCAAAACATTGCTCTTACATTG
TTTGCATCTACG
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