DY271203

Overview
NameDY271203
Unique NameDY271203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 86/171 (50.29%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A DP+ LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ  G   + LTLF S
Sbjct:   23 ATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGS 193          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  165 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F ST
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGST 193          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  165 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F ST
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGST 193          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 89/173 (51.45%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  165 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +  +TNN   S VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F ST
Sbjct:   22 AYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGST 194          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S
Sbjct:   26 ATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGS 196          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 89/173 (51.45%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSP--IKVNGFPCKAN---FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CV   T    + VNG  CK     F++ DFF   L +P  TNN  GS VT  NV  + GLNTLG+SL RIDYAP G NPPHTHPRATEI+ V +G L VGF ++    N L +K++  G+ FVFP GL+HFQ N G  PA  IA  +SQ  G   IA T+F S
Sbjct:   24 ASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFAD-DFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGS 195          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGS 198          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG   T    N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGS 198          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 87/171 (50.88%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  165 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGS 192          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  156 NTAAADPEMLQDVCVADLTSPIKVN----GFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            +T AADPE +QD CVA   +  + +    GFPCK   + +  DFF   LA   +T+N FG+++   NV+  P LNTLGV++ R+D APGG+NP H+HPRA E+V V+ G++ VGF +TA    SK + +GE F  PRGL+HFQ N GN  A  +  FNSQL G    A  LF +
Sbjct:   31 STCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGA 204          
The following BLAST results are available for this feature:
BLAST of DY271203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GER2_WHEAT3.587e-3750.29Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
GL117_ARATH4.685e-3752.02Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH4.685e-3752.02Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL113_ARATH4.685e-3751.45Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL35_ORYSJ6.118e-3750.29Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL18_ARATH6.118e-3751.45Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL36_ORYSJ7.991e-3750.29Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ1.044e-3650.29Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL118_ARATH1.044e-3650.88Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL37_ORYSJ1.363e-3646.55Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271203 ID=DY271203; Name=DY271203; organism=Citrus clementina; type=EST; length=662bp
CTCTCTCTCTCTCTTTCTCCATCTCTATCTTTTCTTCTTTCTTTATCTTC
GCCTGCAGCAATAACAAGATCATAATTGAACTTACTTTTGTAACCATGGC
TGCTGCTGCTGCTGGTGCTTTGACACTTTTTGTTGTCACTGTTGCTGTGA
TCTTGAACACTGCTGCTGCTGATCCCGAAATGCTTCAAGATGTTTGTGTG
GCAGACCTCACTTCCCCTATTAAAGTCAATGGGTTCCCCTGCAAAGCAAA
CTTTTCAGAGATGGACTTTTTCTCAGACAAATTAGCAAAGCCAGCAGCCA
CAAACAACACGTTTGGTTCAACAGTAACAGCAGCCAATGTCCAAACAATC
CCAGGCCTAAATACTCTTGGTGTCTCACTCGCACGCATTGACTATGCCCC
CGGCGGCATAAACCCGCCGCACACGCACCCCCGTGCCACCGAGATCGTCT
TTGTCCTCGAGGGTCAACTCGACGTAGGCTTCTTCACTACTGCCAACGTT
TTGGTATCAAAATCCATCAAAAAGGGTGAAAACTTCGTGTTTCCAAGAGG
GTTGGTGCATTTCCAGAAGAACAATGGAAATGTCCCTGCTTCTGTTATTG
CTGGCTTTAATAGCCAGCTGCAGGGGACTCAAAACATTGCTCTTACATTG
TTTGCATCTACG
back to top