DY271209

Overview
NameDY271209
Unique NameDY271209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1035
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.765e-54
Identity = 111/210 (52.86%), Postives = 144/210 (68.57%), Query Frame = 1
Query:  256 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMNPNVMEAK---------------VVVSSCGPEGPLGA 819
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CM+PNV+E                 V++S+ G +GP GA
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGA 243          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.611e-23
Identity = 64/172 (37.21%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W G   F+ +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   ++P  +EAK VV S G
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTG 167          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.104e-23
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   ++P  +EAK V+ S G
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTG 168          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.688e-23
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   ++P  +EAK V+ S G
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTG 168          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 6.123e-23
Identity = 62/172 (36.05%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       ++P  +EAK V+ S G
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTG 168          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.852e-20
Identity = 70/238 (29.41%), Postives = 121/238 (50.84%), Query Frame = 1
Query:  283 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSCMNPNVMEAKVVVSSCGPEGPLGALE*EVEKYRND*GSGRDEGP-ELDSAKNLWER*PGELVPGKKFPGRKFCQN*RGPQNG 990
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW   V +       ++P  ++A  VV   G    + +L       +      + E P + D A+       GE+ PG    G   C    GP+ G
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNWGPTVRLGLH----VDPITVKASFVVDGTGHPANVVSL-----LAKRGLVEMKTEFPMDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMG 228          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 9.150e-19
Identity = 54/176 (30.68%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  271 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W GG +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       ++P  + A+ V+ + G
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATG 169          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.321e-17
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  274 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C++P  +EA VVV + G
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATG 181          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.321e-17
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  274 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C++P  +EA VVV + G
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATG 181          
BLAST of DY271209 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.908e-16
Identity = 60/181 (33.15%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  271 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMNPNVMEAKVVVSSCG 798
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WLGG L + + VR PA   LDEL + Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V       +C++P  +E+ +VV S G
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTG 181          
The following BLAST results are available for this feature:
BLAST of DY271209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
THI4_YEAST1.765e-5452.86Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRKO1.611e-2337.21Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU2.104e-2337.21Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB4.688e-2337.21Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO6.123e-2336.05Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA4.852e-2029.41Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH9.150e-1930.68Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_HALSA1.321e-1731.46Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS31.321e-1731.46Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALWD1.908e-1633.15Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271209 ID=DY271209; Name=DY271209; organism=Citrus clementina; type=EST; length=1035bp
ATCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCA
GCAGGGGAAGGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCTA
CAGCTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCA
TCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCAT
CAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTC
CTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTT
TCTCGTGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGA
CACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTT
ATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCT
GTTAGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCAT
GGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACT
ACGATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACC
TCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAA
TGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTG
TGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGC
ATGAATCCCAATGTAATGGAAGCCAAGGTGGTTGTGAGCTCCTGTGGCCC
TGAAGGGCCTTTGGGTGCCCTGGAGTAAGAAGTTGAAAAATATCGGAATG
ATTGAGGAAGTGGCCGGGATGAAGGCCCTGAACTGGACTCCGCAAAAAAT
CTATGGGAAAGGTGACCCGGGGAGTTGGTCCCGGGGAAAAAATTTCCCGG
CAGGAAATTTTGCCAAAATTGAAGGGGCCCCCAAAATGGGGGCCCAATTT
TGAACAAATGAAAAAAACCCGGGGCAAAAAGGCTC
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