DY271230

Overview
NameDY271230
Unique NameDY271230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271230_ssr685 microsatellite DY271230_ssr685:685..738. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14379 contig Ccv1_Contig14379:41..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 8.804e-41
Identity = 88/152 (57.89%), Postives = 115/152 (75.66%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLKAR E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQL 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.502e-40
Identity = 85/152 (55.92%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + L+RY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +RS K Q ML  +S
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLS 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.562e-40
Identity = 91/163 (55.83%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT------------LEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRGRV+LKR+ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALIVFS +GKL+E+ + S M + LERY++  Y           P GN T             EY KLKAR E LQR+Q++ MGEDL  LS K+L+++E+Q+DS LK IRS + Q ML  +
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYG---------APEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQL 154          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.346e-40
Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+S+E+Q+DS LK IR+ + Q ML  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLN 155          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 3.346e-40
Identity = 84/152 (55.26%), Postives = 116/152 (76.32%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCY-AERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + + + + LE+Y   CY A+    A     + +W  E S+LK ++E LQR+Q+H +GEDL  LS+KELQ +E+Q++  L   R RK Q+M++ +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQV 151          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 4.370e-40
Identity = 85/154 (55.19%), Postives = 117/154 (75.97%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+DS LK +R+ + + ++  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLT 154          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 4.370e-40
Identity = 85/154 (55.19%), Postives = 117/154 (75.97%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+DS LK +R+ + + ++  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLT 154          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.707e-40
Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV+LIVFS +GKL+E+ + S M + LERY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +R  K Q ML  +S
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLS 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.660e-39
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIE KINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLK R E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  ++
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLT 153          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.660e-39
Identity = 88/159 (55.35%), Postives = 114/159 (71.70%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+ +E+Q+DS LK IR+ + Q ML  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLN 155          
The following BLAST results are available for this feature:
BLAST of DY271230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL9_PETHY8.804e-4157.89Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP1_ARATH1.502e-4055.92Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MTF1_PEA2.562e-4055.83MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH3.346e-4055.97Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD17_ORYSJ3.346e-4055.26MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS7_ORYSJ4.370e-4055.19MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.370e-4055.19MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP2_ARATH5.707e-4055.92Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_SOLLC1.660e-3956.21Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL9_SINAL1.660e-3955.35Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YE16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271230 ID=DY271230; Name=DY271230; organism=Citrus clementina; type=EST; length=1063bp
ATGCAGCACACTACTCACTACCTGCTCTAATCTCTTTTTCTATAAAAGTA
CAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAG
AATTGCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGG
TGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCT
AAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTG
TGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAGCTCTTTG
AATACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGG
TATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGG
AAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTAC
AAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTC
AAAGAGCTTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCAT
TCGATCAAGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGA
AAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTA
CACTTTCGCAATTCTCAAATATCAGCCCTCTAGCTATATATATATATATA
TATATATATATATATATATATATATATATATATATATAAAATATCCATTT
TTGGTTCTGAAAAATTTTTTGCTTATTTATACCATATTTTGATTAATTGA
GACCAGGTAAAAGAAAAAGGAAAACCTTTTTGGCCCAAGGAGGGGCCGTG
CAGGGGAACACCCACCACCCCCCTAATCTTGGGGGGGAACTCCTCCCAGG
GTTTCCTTAAGGGCAAATATTGCCCAAATCCCCTTACCAAAGGGGGGGGG
GGCCGGGAGAGGGAGGAGAAGAAATCCCCGAAGGAGCACCCCCCCCACCC
CCCCCGCGCCCCCCGCTGGGATCCTCCCCCCCCCCTTTTTAAAATATTTA
AAAAAAAAGAGAT
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