DY271230

Overview
NameDY271230
Unique NameDY271230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271230_ssr685 microsatellite DY271230_ssr685:685..738. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14379 contig Ccv1_Contig14379:41..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.778e-33
Identity = 74/152 (48.68%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  L    ++ MGE LA + LKEL+++EQ+I+ G+  IRS+KN+L+   I
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEI 166          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.174e-33
Identity = 71/152 (46.71%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFST+G+L+EY+ +S ++  +ERY++ C  +    ++  E N   +  E SKL+  +  +Q+N ++ MGE L  L++++L+ +E +++ G+  IRS+KN+L+   I
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNS-VKGTIERYKKAC-TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEI 166          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.174e-33
Identity = 69/151 (45.70%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFST+G+L+EY+ ++ +   +ERY++ C         +      +  E +KL+ +++ +Q + ++ MG+ L+ LS+KEL+ VE +++  +  IRS+K++L+L  I
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN-IRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEI 150          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.966e-32
Identity = 69/152 (45.39%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++ C ++     +  E N   +  E SKL+ ++  +Q + +H +GE L  L+ KEL+++E +++ G+  +RS+KN+L++  I
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEI 165          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.664e-31
Identity = 66/153 (43.14%), Postives = 111/153 (72.55%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN--WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++++KRIENK +RQVTF KRR+GLLKKA+E+++LCDAE+ALIVFS++G+L+E+S  +     +ERY++   A     A  I+ N +  +  E +K++ +++ LQ   +H +GE + +++ KEL+S+E +++ G+  IRS+K++L+   I
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK-ASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEI 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.708e-31
Identity = 67/152 (44.08%), Postives = 110/152 (72.37%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++ C ++        E N   +  E SKL+ ++  +Q   +H +GE L  L+ KEL+++E +++ G+  +RS+K+++++  I
Sbjct:   16 IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEI 165          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.842e-31
Identity = 66/151 (43.71%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++ ++RI+N  +RQVTFSKRR+G+ KKA E+++LCDAEV L++FS+ G+L+EYS+ S M+ +++RY +    E+Q  AN       W  E + L+ ++  LQ N +  MGEDL+ L++KELQS+E Q++  L+ +R++K+ +++  I
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTS-MKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEI 149          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.840e-30
Identity = 67/151 (44.37%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++++KRIEN  NRQVTFSKRR GLLKKA+E++VLCDA V +++FS+ GK+FEY + +C  R  E  E+Y +A       EI  +    LE +++K  ME L+   + + G+DL+ L+L ++  +EQQ++  +  +R+RK+QL+ Q +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLR--ELIEQYQHATNS-HFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQL 148          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.099e-30
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++++KRIEN  +RQVTFSKRR+GLLKKAHE+SVLCDAEVA+IVFS  GKLFE+S+ S M++ L RY  Y  +      N    N     E   LK  + +LQ    H  G+ L  LSLKELQ +E+Q++  L  +R RK  L+ + +
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS-MKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQL 150          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.354e-30
Identity = 69/153 (45.10%), Postives = 106/153 (69.28%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQL--QANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 587
            MGRG++ ++RI++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS+ GKL+++++ S M+ +++RY +    ++QL   A+E++    W  E + L+  +  LQ N +  MGE L  LS+ EL S+E QI+  L+ IR RK QL+ Q I
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSS-MKSVIDRYNKSKIEQQQLLNPASEVK---FWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEI 149          
The following BLAST results are available for this feature:
BLAST of DY271230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AG_SOLLC1.778e-3348.68Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PANGI5.174e-3346.71Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL11_ARATH5.174e-3345.70Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL1_ARATH1.966e-3245.39Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD21_ORYSJ1.664e-3143.14MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL5_ARATH3.708e-3144.08Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD27_ORYSJ4.842e-3143.71MADS-box transcription factor 27 OS=Oryza sativa s... [more]
M17_MAIZE1.840e-3044.37MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL15_BRANA4.099e-3049.67Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL21_ARATH5.354e-3045.10Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YE16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271230 ID=DY271230; Name=DY271230; organism=Citrus clementina; type=EST; length=1063bp
ATGCAGCACACTACTCACTACCTGCTCTAATCTCTTTTTCTATAAAAGTA
CAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAG
AATTGCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGG
TGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCT
AAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTG
TGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAGCTCTTTG
AATACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGG
TATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGG
AAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTAC
AAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTC
AAAGAGCTTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCAT
TCGATCAAGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGA
AAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTA
CACTTTCGCAATTCTCAAATATCAGCCCTCTAGCTATATATATATATATA
TATATATATATATATATATATATATATATATATATATAAAATATCCATTT
TTGGTTCTGAAAAATTTTTTGCTTATTTATACCATATTTTGATTAATTGA
GACCAGGTAAAAGAAAAAGGAAAACCTTTTTGGCCCAAGGAGGGGCCGTG
CAGGGGAACACCCACCACCCCCCTAATCTTGGGGGGGAACTCCTCCCAGG
GTTTCCTTAAGGGCAAATATTGCCCAAATCCCCTTACCAAAGGGGGGGGG
GGCCGGGAGAGGGAGGAGAAGAAATCCCCGAAGGAGCACCCCCCCCACCC
CCCCCGCGCCCCCCGCTGGGATCCTCCCCCCCCCCTTTTTAAAATATTTA
AAAAAAAAGAGAT
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