DY271244

Overview
NameDY271244
Unique NameDY271244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PRO1B_ACACA (Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQ YVD +L   +    ++ AAI+G DG+ WA S  F  + P + T +   FN    +   G  L G  Y+ ++ +  ++  GKKG  GV   KTS A+++G+Y+E + PG    +VE+L DYLI QG
Sbjct:    3 WQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIY-GKKGAAGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PRO1A_ACACA (Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQ YVD +L   +    ++ AAI+G DG+ WA S  F  + P +   + + FN    +  +G  L G  Y+ ++ +  ++  GKKG  GV   KTS ++++G+Y+E + PG    +VE+L DYLI QG
Sbjct:    3 WQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIRASGFDLAGVHYVTLRADDRSIY-GKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF2_PHYPO (Profilin-P OS=Physarum polycephalum GN=PROP PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQ YVD+ L   +    L  A IIG DG+ WA S+N   LK  E   I   F  P  +  +G+ + G KYM I+G+  ++  GKKG  GV    T   ++IG Y+E   PG   ++VE+L DYLI+ G
Sbjct:    3 WQTYVDEQL---VGTGQLDGAIIIGLDGNSWA-SKNLT-LKAGEGQAIAALFKTPANVFASGITINGIKYMGIKGDSRSIY-GKKGATGVATVITGQCILIGYYNEKQQPGNAALVVEKLADYLIENG 124          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF_SCHPO (Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 50/129 (38.76%), Postives = 66/129 (51.16%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQAYVD  LL       +  AAI+   G SVWA S  F  L P+EI G+   F +P ++  TG+ L G KY+ I+ E G  I GK    G+    T   +++  Y E   PG+   I E L DYL+  G
Sbjct:    3 WQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVG 126          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF3_CAEEL (Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDY 481
            W   ++++L   I   ++S AAI+G DG+VWA+S+NF  +  EE       F     L  TGL L G K++V+  +   +I GK+G  G  I KT  A+II IY++ + P  C+     L DY
Sbjct:    3 WSDIINNNL---IGSGNVSKAAILGFDGAVWAKSDNF-NISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLVLNADNDRII-GKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF3_DICDI (Profilin-3 OS=Dictyostelium discoideum GN=proC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQAY+D +L   I    +SA  +   DGS WA S  F  +   E   I++ F +    +  G+ +   K  V++ +  ++   KK  GGV + KT+  +++ +Y+  + PG      E LGDYL +QG
Sbjct:    3 WQAYIDTNL---IGSGFISAQILSSADGSSWANSNGF-SVSATEAQHILSCFKDSNKASAMGITINNVKNFVLKADDKSIY-AKKDAGGVVLVKTNQTILVAVYNSNLQPGAAANACEALGDYLREQG 125          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF_CANAL (Profilin OS=Candida albicans GN=PFY1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 496
            WQAY+D+     I    +  AA+    G ++WAQS +F +L+  EIT I   F+    L  +GL++ G KY +++ +  ++  GK    GV   +T   ++I  Y   + PG+   +VE+L DYLI+ G
Sbjct:    3 WQAYIDNL----IANGKVDKAALYSRAGDALWAQSGSF-ELQQPEITEIAKGFDSAEGLQTSGLHVQGQKYFLLRADDRSIY-GKHEAEGVICVRTKQTILIAHYPSGVQPGEATTLVEKLADYLINVG 125          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF1_STRPU (Profilin OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGN---HLSAAAIIGHDGSVW-----AQSENFPQLKPEEITGIMNDFNEPGTLA--PTGLYLGGTKYMVIQGEPGAVIRGKK-GPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYL 484
            W +YVD+ +    + +   H   A IIG DGS W     + + N  +L PEE+  I   F      A   +G+Y+ GTKY  ++ E   ++ GKK G G +T++ +  A++IG   E    G  N  V  + +YL
Sbjct:    3 WDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTMPTSDTSNNLKLTPEEMANIAKCFKSKDFAAFMSSGIYVNGTKYQFLREEDSKLVLGKKKGEGSLTLQSSKTAIVIGHCPEGGQQGNLNKAVGVIAEYL 137          
BLAST of DY271244 vs. ExPASy Swiss-Prot
Match: PROF_ENTHI (Profilin OS=Entamoeba histolytica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  113 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEIT-GIMNDFNEPGTLAPTGLYLGGTKYMV--IQGEPGAVIRGKKGPGGVTIKKTSAALIIGIY-DEPMTPGQCNMIVERLGDYLIDQG 496
            WQ+YVD  L+   +G      AIIG  G VWA S N      E +  G     N  G L  TG+ +GG KYM+  +  + G  + GKKG  G++I KT  A+IIG + D  ++ GQ +    +   YL+D G
Sbjct:    3 WQSYVDSFLVGAGKG---MGGAIIGLQGGVWAASANCTPSAQESVAIGTACASNIAG-LQQTGVVIGGKKYMITRVDADEGTAM-GKKGAEGISIYKTKQAVIIGYFSDASVSAGQNSDATYKCAKYLMDAG 129          
The following BLAST results are available for this feature:
BLAST of DY271244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PRO1B_ACACA3.831e-1737.50Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3[more]
PRO1A_ACACA1.901e-1635.94Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2[more]
PROF2_PHYPO5.532e-1639.84Profilin-P OS=Physarum polycephalum GN=PROP PE=1 S... [more]
PROF_SCHPO1.043e-1438.76Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1... [more]
PROF3_CAEEL1.967e-1336.59Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2... [more]
PROF3_DICDI3.710e-1231.25Profilin-3 OS=Dictyostelium discoideum GN=proC PE=... [more]
PROF_CANAL1.080e-1133.33Profilin OS=Candida albicans GN=PFY1 PE=3 SV=1[more]
PROF1_STRPU5.358e-1131.85Profilin OS=Strongylocentrotus purpuratus PE=2 SV=... [more]
PROF_ENTHI6.997e-1137.12Profilin OS=Entamoeba histolytica PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YF10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271244 ID=DY271244; Name=DY271244; organism=Citrus clementina; type=EST; length=635bp
CTCTTCTCGACTTTATTAAGTCTTAAACACACTCATTTGTAAAAAGGCTT
CAGGAAAAAAAAAAAAATTCACAGAGAAATCAGAGGAATCATCAAAGCAG
AAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAAT
TGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCG
TTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACT
GGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGACT
GTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTG
TCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGT
GCAGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTG
CAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTT
AGGTGGTTTGCATGTCCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAA
AAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCCAAGTT
ATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGC
back to top