DY271306

Overview
NameDY271306
Unique NameDY271306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.833e-11
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEE-----SFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGL-RLAVDAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKS 643
            G + V+ R   +  IT   ++V +E      F   GA+ VKE  +   +    G     V++ A+    +  V A ++P D+  G+ +  V  V EI +     +T +EI+QVG+ +AN +  IGE+ A A ++VG+ G   + D GKS
Sbjct:   35 GRNVVLDRSFGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIVQEGMKFVAAGMNPMDLKRGIDKAVVSLVGEIAKIAKPCATSKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVED-GKS 182          

HSP 2 Score: 28.4906 bits (62), Expect = 4.833e-11
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  693 VSSYFTNQKAKD-CVLENPFFLILENMIVSQNI-----VEQAIARADSRPLLIGGED 845
            +S YF N + K    L+NPF L+ +  I   NI     V + +A++  RPLLI  ED
Sbjct:  200 LSPYFINNQDKQIAALDNPFILLFDKKI--SNIRDLLPVLEQVAKS-GRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_JANMA (60 kDa chaperonin OS=Janthinobacterium sp. (strain Marseille) GN=groL PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.833e-11
Identity = 46/152 (30.26%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEESFLAS-----GARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + V++R   +  +T   ++V +E  L       GA+ VKE  +   +    G     V++ A+    +  V A ++P D+  G+  AV A  E L   A+  +T +EI+QVG+ +AN +  IGE  A A ++VG+ G   + D GKS ++
Sbjct:   35 GRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASRTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVAATVEQLAAIAKPCTTTKEIAQVGSISANSDASIGERIAEAMEKVGKEGVITVED-GKSLND 185          

HSP 2 Score: 31.187 bits (69), Expect = 4.833e-11
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  693 VSSYFTNQKAKD-CVLENPFFLILENMIVSQNI-----VEQAIARADSRPLLIGGED 845
            +S YF N   K   +LENPF L+ +  I   NI     V + +A+A  RPLLI  ED
Sbjct:  200 LSPYFINNPEKQTAILENPFILLCDKKI--SNIRDLLPVLEQVAKA-GRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: HSP60_SCHPO (Heat shock protein 60, mitochondrial OS=Schizosaccharomyces pombe GN=hsp60 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRC-RAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + +I +P  S  IT   + V     +++ F   GAR V++  +        G     V++ A+    +  V A  +P D+  G++LAVD V E L+  +   +T EEISQV T +ANG+  IGEL A A +RVG+ G   +++      E  V
Sbjct:   66 GRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISDELEV 220          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.271e-11
Identity = 44/152 (28.95%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEESFLAS-----GARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQASTF-EEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + V++R   +  +T   ++V +E  L       GA+ VKE  +   +    G     V++ A+ +  +  V A ++P D+  G+  AV A+ E L+  ++A+T  +EI+QVG+ +AN ++ IG++ A A  +VG+ G   + D    +SE
Sbjct:   35 GRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVHEGMKYVAAGMNPMDLKRGIDKAVHALVEELKKASKATTTSKEIAQVGSISANSDETIGKIIADAMDKVGKEGVITVEDGKSLESE 186          

HSP 2 Score: 26.5646 bits (57), Expect = 6.271e-11
Identity = 21/57 (36.84%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  693 VSSYFTNQKAKD-CVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF N   K   +L+NPF L+ +  I   NI +     + +A+A  RPLLI  E+
Sbjct:  200 LSPYFINNPEKQSALLDNPFVLLYDKKI--SNIRDLLPTLEQVAKA-GRPLLIIAEE 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.138e-11
Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEESFLAS-----GARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDA-VAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + VI+R   +  +T   ++V +E  L       GA+ VKE  +   +    G     V++ A+       V A ++P D+  G+  AV A VAE+ +     +T +EI+QVG+ +AN ++ IG+L A A  +VG+ G   + D    +SE
Sbjct:   35 GRNVVIERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGINPMDLKRGIDKAVTALVAELKKASKPTTTSKEIAQVGSISANADETIGKLIADAMDKVGKEGVITVEDGKSLESE 186          

HSP 2 Score: 26.1794 bits (56), Expect = 8.138e-11
Identity = 20/57 (35.09%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  693 VSSYFTNQKAKDC-VLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF N   K   +L+NPF L+ +  I   NI +     + +A+A  RPLL+  E+
Sbjct:  200 LSPYFINNPDKQAALLDNPFVLLFDKKI--SNIRDLLPTLEQVAKA-GRPLLVIAEE 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_DECAR (60 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groL PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.139e-11
Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEE-----SFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDA-VAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKS 643
            G + V++R      +T   ++V +E      F   GA+ VKE  +   +    G     V++ ++    +  V A ++P D+  G+  AV A +AE+       +T +EI+QVG+ +AN +  IGE+ A A ++VG+ G   + D GKS
Sbjct:   35 GRNVVLERSFGGPTVTKDGVSVAKEIELKDKFANMGAQMVKEVASKTSDIAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVVATIAELQAFSKPCTTTKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVED-GKS 182          

HSP 2 Score: 30.0314 bits (66), Expect = 8.139e-11
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 3
Query:  693 VSSYFTNQKAKD-CVLENPFFLILENMIVSQN----IVEQAIARADSRPLLIGGED 845
            +S YF N   K   +LENPF L+ +  I +      I+EQ +A+A  RPLLI  ED
Sbjct:  200 LSPYFINNGDKQQALLENPFVLLFDKKISNIRDLLPILEQ-VAKA-GRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUO2 (60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUME (60 kDa chaperonin OS=Brucella melitensis GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUMB (60 kDa chaperonin OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUAB (60 kDa chaperonin OS=Brucella abortus GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189          
The following BLAST results are available for this feature:
BLAST of DY271306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CH602_CHRVO4.833e-1130.2060 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH60_JANMA4.833e-1130.2660 kDa chaperonin OS=Janthinobacterium sp. (strain... [more]
HSP60_SCHPO6.244e-1132.26Heat shock protein 60, mitochondrial OS=Schizosacc... [more]
CH602_POLNA6.271e-1128.9560 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH60_VEREI8.138e-1130.2660 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_DECAR8.139e-1129.5360 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH60_BRUO28.155e-1130.3260 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH60_BRUME8.155e-1130.3260 kDa chaperonin OS=Brucella melitensis GN=groL P... [more]
CH60_BRUMB8.155e-1130.3260 kDa chaperonin OS=Brucella melitensis biotype 2... [more]
CH60_BRUAB8.155e-1130.3260 kDa chaperonin OS=Brucella abortus GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271306 ID=DY271306; Name=DY271306; organism=Citrus clementina; type=EST; length=955bp
TCTCAGTTTATAATCTCTATTCATCTATCGTCAAAAATAAATTAATACGT
AAGAGAAAAAAAAATTCAGCAAACTCAACTCTTTTATTCTCTTTGACATC
CACGTAGTTATGTTACGGTTAGCTTCTAGGATCGCTTCCAACGTCAGGTT
GCCTAATAACAACAGATTAAGTTGGAGAAGAAACTATGCTCATGCTGGCA
AAGATAATAACTATGGCGCTGATGATGTTATCCAGAGGCCCATGTTGAGT
GAATTGATAACTAATAAGGATCTCAATGTTATTGAAGAAAGTTTTCTGGC
TAGTGGTGCAAGGTTTGTGAAGGAAGCTCTAAACCCTATATGCAATCCAG
ATGAACATGGATTTAAATATTGGGGTGTCATGAGTTCAGCTGTAGCTTAT
AGATTACTCTTAGCAGTGAAAGCTAAATTGGATCCCAAGGATATAGATGT
GGGTCTTCGTTTGGCTGTTGATGCAGTTGCCGAAATCTTACGCTGCAGAG
CACAGGCCAGCACATTTGAAGAAATTTCCCAGGTTGGAACCGCAGCAGCA
AATGGGAACAAAATAATTGGTGAGCTTGCTGCCATGGCTTGTCAGAGAGT
TGGAGAACATGGTCATTATATCATCAGGGATAATGGAAAATCAAAGAGTG
AAAGTAGAGTTTTTTAATTTTATGAAACTAAAATGGCGTCCCGTGTCCTC
TTACTTCACCAATCAAAAGGCTAAAGATTGTGTTTTGGAAAATCCTTTCT
TTTTAATCCTTGAGAACATGATTGTGAGCCAGAATATTGTTGAGCAAGCA
ATTGCACGGGCGGATTCCAGACCTTTATTGATTGGTGGTGAGGATGGTTG
AAAAAAACTGAAAGGTTCCCTTATTCGGGGCAAAACTGGTCTCCAAAACA
AGGTTTCTATGGCCAAACCCAGGAAAACCAACATGAAAAAAAAACAAAGG
CCTCA
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