DY271323
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 9.255e-99 Identity = 192/318 (60.38%), Postives = 233/318 (73.27%), Query Frame = 2 Query: 128 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 D V T A G+ + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KF F+ ++ K KL D L+ Q++ VK V + L LLV++ FP I + G P ++ L+R+++ Sbjct: 16 DEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM-PQEERLSRYQQ 332
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3) HSP 1 Score: 357.836 bits (917), Expect = 5.999e-98 Identity = 187/298 (62.75%), Postives = 226/298 (75.84%), Query Frame = 2 Query: 164 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KF F+ ++ K KL D L+ Q++ VK V + L LLV++ FP I + G P ++ L+R+++ Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM-PQEERLSRYQQ 332
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1) HSP 1 Score: 357.836 bits (917), Expect = 5.999e-98 Identity = 187/298 (62.75%), Postives = 226/298 (75.84%), Query Frame = 2 Query: 164 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KF F+ ++ K KL D L+ Q++ VK V + L LLV++ FP I + G P ++ L+R+++ Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM-PQEERLSRYQQ 332
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1) HSP 1 Score: 356.681 bits (914), Expect = 1.336e-97 Identity = 190/318 (59.75%), Postives = 230/318 (72.33%), Query Frame = 2 Query: 128 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 D V A G+ + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P +KVAVF+GG+ +K +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KF F+ ++ K KL D L+ Q++ VK V + L LLV++ FP I + G P ++ L+R+++ Sbjct: 16 DEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM-PQEERLSRYQQ 332
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 8.662e-97 Identity = 184/313 (58.79%), Postives = 226/313 (72.20%), Query Frame = 2 Query: 119 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 QAP + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P +KV+VF+GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KF F+ ++ + K KL D L+ Q++ VK V + L LLV++ FP I + G ++ L+R+++ Sbjct: 20 QAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER-LSRYQQ 331
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2) HSP 1 Score: 353.984 bits (907), Expect = 8.662e-97 Identity = 184/313 (58.79%), Postives = 226/313 (72.20%), Query Frame = 2 Query: 119 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 QAP + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KF F+ ++ + K KL D L+ Q++ VK V + L LLV++ FP I + G ++ L+R+++ Sbjct: 20 QAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER-LSRYQQ 331
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 352.443 bits (903), Expect = 2.520e-96 Identity = 183/313 (58.47%), Postives = 225/313 (71.88%), Query Frame = 2 Query: 119 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 Q P + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P +KV+VF+GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KF F+ ++ + K KL D L+ Q++ VK V + L LLV++ FP I + G ++ L+R+++ Sbjct: 20 QVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER-LSRYQQ 331
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3) HSP 1 Score: 332.413 bits (851), Expect = 2.699e-90 Identity = 179/311 (57.56%), Postives = 226/311 (72.67%), Query Frame = 2 Query: 140 TKANGEAA-KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*I--EWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFK 1054 T NGE + KKG YVGIHS+GFRDFLLKPELLRAI DSGFEHPSEVQ CIPQ+ILG DV+CQAKSGMGKTAVFVLSTLQQ EP G+V+ LVLCHTRELA+QI +E+ RFS YLPD++ AVFYGG+NIK + K++ P IVV TPGR+ AL R+K L + +V+HF+LDECDK+LES+DMRRD+QE+F+ TP KQVMMFSATLS EIRP+C+KF N ++++ + H + E K K++D L+ Q++ VK V++A EL LL + FP IC+ G P ++ + R+K Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKF--MQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICI-HGGLPQEERIKRYK 339
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3) HSP 1 Score: 327.791 bits (839), Expect = 6.648e-89 Identity = 174/316 (55.06%), Postives = 222/316 (70.25%), Query Frame = 2 Query: 116 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFK 1054 + AP++ A A+ +A KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG++T LV+CHTRELAYQI +E+ RFS Y+PD+K VFYGG+ I + LKN+ CP IVV TPGR+ AL +K + L NV+ F++DECDK+LE++DMRRDVQ+IF+ TPH KQVMMFSATLS+EIRPVC+KF ++ ++ K KL D L+ Q++ VK ++A EL LLV FP I + A P ++ + R+K Sbjct: 22 SNAPEAGADGADKDADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTSRANELNKLLVASNFPSIAV-HSAMPQEERIARYK 336
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 3.299e-88 Identity = 176/317 (55.52%), Postives = 220/317 (69.40%), Query Frame = 2 Query: 125 PDSVATKANGEAA---KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFYARSNGNFMWMNKASXXXXXXXXXH*IEWAGKKPKLDDPLEPWNLIQLLFLVKGVTQARELKSLLVKRIFPLICLPFGAGPPKKGLTRFKR 1057 P + A + NG+ A KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ ECIPQAILG DV+CQAKSGMGKTAVFVL+ LQQ EP G+V+ ++LCHTRELAYQI +EF RFS ++ +++ VFYGG I +++L K +CP IVVGTPGR +AL RDK L+ V+HF+LDECDKMLE LDMRRDVQEIF+ TPH KQVMMFSATLSK+IR C+KF ++ +E K KL+D L+ Q+ VK V +A +L +LL + FP IC+ G ++ ++RF++ Sbjct: 33 PPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAER-ISRFQQ 348 The following BLAST results are available for this feature:
BLAST of DY271323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY271323 ID=DY271323; Name=DY271323; organism=Citrus clementina; type=EST; length=1061bpback to top |