DY271329

Overview
NameDY271329
Unique NameDY271329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.056e-31
Identity = 76/258 (29.46%), Postives = 139/258 (53.88%), Query Frame = 2
Query:   62 LDTIMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLLGLVKSCIGTKFTSQF----GDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +  ++  P+++LK+      G     +NI A  A+ D +RTTLGPR M K++  +   + ++NDG  +++ LD+ HPAA+++++++++QD EVGDGTTSV++LAGE L  A+ F+ +  HP +I RA+  A E A   +  +++ I   ++   ++ C  T   S+         + + +DA   +  ++     ++D+   I ++K  GG L DS+ + G  F +     G  +  + I    +  L + L  K EK
Sbjct:    1 MSQMIRPPIVLLKEGTDTSQGLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIKPENMREFLEKCASTSMNSKLIASHKQFFSKMVVDAVQLLDDNI-----DLDM---IGIKKESGGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCLNIELELKAEK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.354e-31
Identity = 90/266 (33.83%), Postives = 139/266 (52.26%), Query Frame = 2
Query:  113 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLD----TIAMPIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKK---------------EKIKQM-ADLVKEK 850
            R+SG  V   N+ A +AV++I++T+LGP  + KML+D  G + +TNDG  ILR L+V HPAAK ++EL+  QD EVGDGTTSV+++A E+L  A + +    HPT I   Y  A+ ++   ++    T    +    L+   K+ + +K  S   D  A+L ++A  +V +   +G  +  IK  I + K  G    DS +L G   N    A G M  +++   ++ L   L   K               EKI+Q  AD+ KE+
Sbjct:   14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKG-INILKAHGQSARDSYLLNGYALNTGRAAQG-MPLRVSPAKIACLDFNLQKTKMQLGVQVVVNDPRELEKIRQREADMTKER 277          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.243e-31
Identity = 83/269 (30.86%), Postives = 141/269 (52.42%), Query Frame = 2
Query:  119 SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAV----AVLDTIAMPIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKI----------KQMADLVKEKNWGIRLKKKKE 883
            SG  + + N+ A+ AVA++++++LGP  + KML+D  G   VTNDG  IL  LDV HPA K ++EL++ QD E+GDGTTSV+++A E+L  A E +    HPT I   +  AL +A+     VL T    +    L+ + K+ + +K      D  +++ +DA   V     +G  +  +K  + V K  G    +S ++ G   N   VA   M ++IA   +    L L+ +K ++           +  + ++++  GI L++ K+
Sbjct:   21 SGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKA-VNVLKAHGKSATESLLVPGYALN-CTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKK 287          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.848e-31
Identity = 76/214 (35.51%), Postives = 123/214 (57.48%), Query Frame = 2
Query:  110 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVA-VLDTIAMPIDA---NDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVA 739
            KR +G  +   N+ A+ A+A+I++++LGP  + KML+D  G ++VTNDG  IL++L+V HPA K ++EL++ QDEEVGDGTTSV+++A E+L  A+E + +  HPT I   Y  A ++AV  + + I+   D+     ++   K+ + +K      D   +L +DA   V V+   G     I   + V K  G    +S ++KG   N  V +
Sbjct:   14 KRTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVE-NNGKVTYPINA-VNVLKAHGKSARESVLVKGYALNCTVAS 225          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.526e-30
Identity = 83/242 (34.30%), Postives = 131/242 (54.13%), Query Frame = 2
Query:  110 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN-----DLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKI 820
            +R SG  V   N+ A+ + A+ ++T+LGP  + KML+D  G + +TNDG  IL+ LDV HPAAK +++L++ QDEEVGDGTTSV++LA  +L  A+E I++  HPT +   Y  A  +A   +    M  D N      L+ + ++ + +K  +   D+ + +A+DA   V V  G       IK  + + K  G  + +S ++ G   N    A  +M R I    ++FL   L   K K+
Sbjct:    7 ERTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQE-HMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVSGGPKGPVYPIKA-VNILKAHGRSMSESMLIDGYALN-CTAASQQMPRIIKKAKIAFLDFSLQKVKMKL 245          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.992e-30
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  152 ASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVA 394
            A+K +ADIIRT LGP+SM+KMLLD  GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VA
Sbjct:    2 AAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVA 82          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.992e-30
Identity = 83/254 (32.68%), Postives = 137/254 (53.94%), Query Frame = 2
Query:   74 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAM----PIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKIK 823
            +  P+ VL +   R SG  V + N+ A+  +A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  ++E + +  HPT I   Y  A ++AV  ++   +     +  + L+   K+ + +K     GD  A + +DA + V     +G     I   I V K  G   ++S ++ G   N  V + G  +R +   +     L  S +K K+K
Sbjct:    4 LEGPLAVLGE---RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGRDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKGQARYPINS-INVLKAHGRSQKESILVNGYALNCVVGSQGMTKRIVNAKI---ACLDFSLQKTKMK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.439e-30
Identity = 78/242 (32.23%), Postives = 132/242 (54.55%), Query Frame = 2
Query:  110 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAM----PIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKIK 823
            +R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT I   Y  A ++AV  ++   +     +  + L+   K+ + +K     GD  A++ +DA   V     +G     +   I V K  G   ++S ++ G   N  V + G  +R +   +     L  S +K K+K
Sbjct:   10 ERTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTDVKGQPRYPVNS-INVLKAHGRSQKESMLINGYALNCVVASQGMPKRIVNAKI---ACLDFSLQKTKMK 247          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.571e-30
Identity = 79/254 (31.10%), Postives = 136/254 (53.54%), Query Frame = 2
Query:   74 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAM----PIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKIK 823
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  ++   +     +  + L+   K+ + +K     GD  A++ +DA   V     +G     +   + + K  G    +S ++ G   N  V + G ++R +   +     L  S +K K+K
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRGQPRYPVNS-VNILKAHGRSQIESMLINGYALNCVVGSQGMLKRIVNAKI---ACLDFSLQKTKMK 247          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.888e-30
Identity = 83/256 (32.42%), Postives = 136/256 (53.12%), Query Frame = 2
Query:   74 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAV------AVLDTIAMPIDANDLLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKIK 823
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV       +++T  +  D   L+   K+ + +K     GD  A+L +DA   +     +G     +   I V K  G    +S ++ G   N  V + G  +R +   +     L  S +K K+K
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDC--LINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNS-INVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKI---ACLDFSLQKTKMK 247          
The following BLAST results are available for this feature:
BLAST of DY271329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
TCPH_DICDI1.056e-3129.46T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPA_ARATH2.354e-3133.83T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_YEAST5.243e-3130.86T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_CAEEL6.848e-3135.51T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_SCHMA1.526e-3034.30T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPG_PIG1.992e-3081.48T-complex protein 1 subunit gamma (Fragment) OS=Su... [more]
TCPA_PALPA1.992e-3032.68T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_MONDO4.439e-3032.23T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_RAT7.571e-3031.10T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_BOVIN9.888e-3032.42T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271329 ID=DY271329; Name=DY271329; organism=Citrus clementina; type=EST; length=935bp
CGGAGTTTAGTTTTGTTGAGTTGAGTTGAGTTGATACCAGTAGTTAGGGT
TTTATCCATTACTTGATACAATCATGCATTCTCCAGTTCTCGTTCTCAAG
GATTCCTTGAAGCGTGAATCTGGAACCAAGGTTCACCATGCCAATATACA
GGCTTCCAAGGCTGTTGCCGATATCATTCGGACAACATTGGGTCCCCGGT
CCATGTTAAAGATGCTACTTGATGCTAGTGGAGGGATTGTAGTTACTAAT
GATGGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAA
GTCAATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAA
CAACATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAG
TTCATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAA
GGCTTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCG
ATGCAAATGATCTGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTC
ACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGCCACCAC
TACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGA
AGTACATTANAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGATTCTAGG
GTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGGGAAAAT
GAGAAGAAAAATTGCAACCCACGTATTATCCTTCTTGATTCTCCCCTTGA
GTACAAAAAAGGAGAAAATCAAACAAATGGCTGATTTGGTTAAGGAAAAA
AACTGGGGAATCCGGTTGAAAAAAAAAAAAGAATACCCCCAAAACCCCCG
GCTGGCGAATTGGGAATTTTAAACCAAAATTGGTA
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