DY271370

Overview
NameDY271370
Unique NameDY271370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.609e-34
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT  + L
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCL 156          

HSP 2 Score: 30.4166 bits (67), Expect = 7.609e-34
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  579 RLIAECLADELL*CRQGFPLTAYAIKKKDEN*RNAQ 686
            + +A+CLADE++   +     ++A++KK+E  R AQ
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.910e-34
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT  + L
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCL 156          

HSP 2 Score: 30.4166 bits (67), Expect = 9.910e-34
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  579 RLIAECLADELL*CRQGFPLTAYAIKKKDEN*RNAQ 686
            + +A+CLADE++   +     ++A++KK+E  R AQ
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.910e-34
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT  + L
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCL 156          

HSP 2 Score: 30.4166 bits (67), Expect = 9.910e-34
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  579 RLIAECLADELL*CRQGFPLTAYAIKKKDEN*RNAQ 686
            + +A+CLADE++   +     ++A++KK+E  R AQ
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.252e-33
Identity = 72/151 (47.68%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L  G R ++FRN
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRN 169          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.635e-33
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIK 580
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+ A+  +  GAR+ AF N K
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPK 168          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.135e-33
Identity = 77/153 (50.33%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIK 580
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPK 157          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.181e-33
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIK 580
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +  GAR  +F N K
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPK 187          

HSP 2 Score: 26.9498 bits (58), Expect = 2.181e-33
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  567 FVTSRLIAECLADELL*CRQGFPLTAYAIKKKDE 668
            F   + I ECLADE++      P  +YA++K++E
Sbjct:  183 FNNPKPIEECLADEIIAAASNDP-RSYAVRKREE 215          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIK 580
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPK 156          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 71/151 (47.02%), Postives = 101/151 (66.89%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  L  GAR  AF +
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHS 159          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.211e-33
Identity = 72/151 (47.68%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  L  GAR  AF N
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHN 159          
The following BLAST results are available for this feature:
BLAST of DY271370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METM57.609e-3447.1730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM79.910e-3446.5430S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM69.910e-3446.5430S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS5_ENCCU1.252e-3347.6840S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE1.635e-3348.0330S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS7_SULTO2.135e-3350.3330S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_PYRIL2.181e-3349.3430S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_SULSO4.756e-3349.0230S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_DESMO4.756e-3347.0230S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_DESK16.211e-3347.6830S ribosomal protein S7P OS=Desulfurococcus kamch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YM01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271370 ID=DY271370; Name=DY271370; organism=Citrus clementina; type=EST; length=842bp
CGAGCGGCAGCTTATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAAC
CCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCCAGCGATCTATCTACTCCCCACTGGT
GCTCGTGAATCGGCTTTTCGTAACATCAAGACTTATTGCCGAATGCTTGG
CCGATGAACTCCTTTAATGCCGCCAAGGGTTTCCTCTAACAGCTTATGCG
ATCAAGAAAAAGGATGAAAATTGAAGAAATGCGCAAGGCCACATCCCTGA
GGACGTGATAGTGGAAAAACCCAATGCGAAAGTTTGACTTTTCAAAAAAA
ACAAAAACTTTTGGACAAAGTTTTTGTTGGCCTTTTTCACAAATGTGGGT
CCCATTTTTGAATACAAAGAACTTGAGGGAGGCATTCACCGC
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