DY271370

Overview
NameDY271370
Unique NameDY271370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.857e-28
Identity = 70/177 (39.55%), Postives = 98/177 (55.37%), Query Frame = 2
Query:   74 ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRMLGR 604
            A A  A+  +P       KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+ A+  L  G    +F+   T    L +
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQ 177          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.857e-28
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNN 185          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.750e-27
Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  TY + L
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQAL 184          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.899e-27
Identity = 63/156 (40.38%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  131 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G   ++ +  K     L
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANAL 163          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.899e-27
Identity = 66/159 (41.51%), Postives = 100/159 (62.89%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++ +F ++   +VQ++D +L  YI ++      YVPH  GR++   F K +  IVERL N +M  G N GKK++A  IVK A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF++ ++  + L
Sbjct:    9 ELLVFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCL 163          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.651e-27
Identity = 59/157 (37.58%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  128 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            KLF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  +  G+ ++AF++ ++    L
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECL 155          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.687e-27
Identity = 71/175 (40.57%), Postives = 97/175 (55.43%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++K+  RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  +Y + L
Sbjct:   14 ELKVMGRWSVEDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQAL 184          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 72/175 (41.14%), Postives = 95/175 (54.29%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            +VK+  RW+ EDV V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  TY + L
Sbjct:   14 EVKVMGRWSVEDVTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQAL 184          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.482e-26
Identity = 71/175 (40.57%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            ++K+  RW+ EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  +Y + L
Sbjct:   14 ELKVMGRWSVEDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQAL 184          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 57/150 (38.00%), Postives = 99/150 (66.00%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F++
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASFKS 146          
The following BLAST results are available for this feature:
BLAST of DY271370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_HALMA7.857e-2839.5530S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_CALMQ7.857e-2842.0030S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_THEGJ1.750e-2741.1430S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_METHJ3.899e-2740.3830S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_ARCFU3.899e-2741.5130S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_METBU6.651e-2737.5830S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_THEON8.687e-2740.5730S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_PYRKO1.135e-2641.1430S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_THECE1.482e-2640.5730S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_METTP1.935e-2638.0030S ribosomal protein S7P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YM01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271370 ID=DY271370; Name=DY271370; organism=Citrus clementina; type=EST; length=842bp
CGAGCGGCAGCTTATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAAC
CCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCCAGCGATCTATCTACTCCCCACTGGT
GCTCGTGAATCGGCTTTTCGTAACATCAAGACTTATTGCCGAATGCTTGG
CCGATGAACTCCTTTAATGCCGCCAAGGGTTTCCTCTAACAGCTTATGCG
ATCAAGAAAAAGGATGAAAATTGAAGAAATGCGCAAGGCCACATCCCTGA
GGACGTGATAGTGGAAAAACCCAATGCGAAAGTTTGACTTTTCAAAAAAA
ACAAAAACTTTTGGACAAAGTTTTTGTTGGCCTTTTTCACAAATGTGGGT
CCCATTTTTGAATACAAAGAACTTGAGGGAGGCATTCACCGC
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