DY271375

Overview
NameDY271375
Unique NameDY271375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1010
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.120e-18
Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  139 AEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKI 675
            A  AGVEV   E+ ++   N   +     PL K+PV    DG P+ E+ AIA Y+A L     L G++  + A V Q+  F+  E+       + PR+    Y   A + A  A+       +  LAS TYLVG  +TLADI   C L +G   ++TKS+ +++ H+ RY  T+ H  K+
Sbjct:   22 AAVAGVEV---EHVDVQPHNFPADLAAKFPLQKMPVFVGKDGFPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKL 198          

HSP 2 Score: 24.2534 bits (51), Expect = 2.120e-18
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  734 RKPAQAKGSAKPKAQAETKKKSPKPQSGTP*K 829
            ++ A AK + K K   E KK +PKPQ+  P K
Sbjct:  220 KEAAPAKKAEKKKD--EKKKNAPKPQAERPAK 249          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.746e-18
Identity = 68/196 (34.69%), Postives = 107/196 (54.59%), Query Frame = 1
Query:   97 VGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLK-MNPLGKVPVLETPDGPVFESNAIARYVARL-KADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKL--IMTKSFTSEFPHVERYLWTVAHPPK 672
            V  EN    K L AA  A V V L +  E G  N++ E+ +  +P G+ PVL+T +G VFESNAI R++ARL ++   LYG + ++ + V+ W+DFSA E+DA    +V+      +  PL    A+  +   L AL   L + T+LVG  +T+AD+ +   L + ++L     ++ T ++ +  R   TV   PK
Sbjct:    9 VNPENARTHKLLAAAALANVAVTL-KACEYGRENETAEYCRNCSPCGRYPVLQTEEGCVFESNAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAASEPFVHHA---FRGEPL-PANAMDRVHEVLRALEAWLETRTFLVGERMTVADVAVAFALQWHYRLNGAEGEALTKKYRNAYRMYNTVMQQPK 199          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.730e-14
Identity = 68/214 (31.78%), Postives = 100/214 (46.73%), Query Frame = 1
Query:  124 KGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEID----ANISRWVY-PRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADI----VMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKK 738
            + L+A E AGV+ +L         ++ PE L  NP GKVPVLE  D  +FES AIAR+V R      L G  L   A V+ W++  A ++     A +   V+ P LG  +   + +E  V  LK+ L+     LA+ TYL G  ++LAD+    +M C +   +  ++        PHV  +   +A  P   K       AQ +P    A K
Sbjct:   19 RALLALEEAGVDYELVPMSRQDGDHRRPEHLARNPFGKVPVLEDGDLTLFESRAIARHVLRKHKPELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDEN-VEKLKKVLEVYEARLATCTYLAGDFLSLADLSPFTIMHCLMATEYAALV-----HALPHVSAWWQGLAARPAANKV------AQFMPVGAGAPK 220          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.154e-12
Identity = 55/200 (27.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  106 ENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVAR---LKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRL--GYMQYIPLAE---EGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKK 681
            ++ N  + L+  E  G E ++       + +KSPE LK NP G++P  +  D  +FES AI +Y+ R    +  + L   +L + A V+ W +    + ++ IS  VY  +    M+ IP  +   + +   LK+ L+     L+ +TYL G  V+ AD+      +Y F      S    +PHV+ +   +   P +KK
Sbjct:   11 QSTNVARVLLCLEEVGAEYEVVNVDFTVMEHKSPEHLKRNPFGQIPAFQDGDLYLFESRAIGKYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFY-FMGTPYASLFDSYPHVKAWWERLMARPSVKK 209          
The following BLAST results are available for this feature:
BLAST of DY271375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_SCHPO2.120e-1833.89Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]
EF1G_TRYCR5.746e-1834.69Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
GSTF4_MAIZE1.730e-1431.78Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GSTF1_ORYSJ6.154e-1227.50Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271375 ID=DY271375; Name=DY271375; organism=Citrus clementina; type=EST; length=1010bp
AACTCCCAGTCTCTGTGGCCTTTGAGGAGAACGCTCGCATTCATCTGTAA
TTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTG
GGCAGGAAAACAAAAATGGATTCAAAGGACTCATTGCTGCTGAGTACGCT
GGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAA
ATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGG
AGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTT
GCACGTCTGAAAGCTGACAATCAACTATATGGTTCTTCTCTGATCGATTA
TGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCATGGAGATTGATGCTA
ATATCTCCAGGTGGGTATATCCAAGACTTGGATATATGCAATACATTCCT
CTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGAGCGTTGGATGCTTT
GAACATTCATTTGGCTTCAAATACGTACTTGGTTGGCCATTCTGTCACCC
TGGCTGACATTGTCATGATATGCAATTTATATTATGGATTTAAGCTCATC
ATGACGAAGAGTTTCACCTCTGAGTTTCCCCATGTTGAGAGATACCTTTG
GACCGTGGCCCACCCACCAAAAATTAAGAAGTTTTGGGTTGATTTTAAGC
AAGCCCAATCTGTCCCAGCTGTTCCGTCTGCAAAGAAAGCCTGCTCAAGC
TAAGGGATCTGCTAAACCAAAGGCCCAGGCCGAAACCAAAAAAAAAAGCC
CCAAACCCCAAAGCGGAACCCCCTGAAAAAAAAGAAACCCCTAAACCCAA
AACAAAAAAACCCTCTTGGATCCGGCGCCCCCCAGGAAAAAACATTCTGG
GCAGACGGGAAAAAGCCTTCACTCCCCCCCAACTCCCCACCTCCCGGGAC
GTTCTCCCTTAAACGCACTCTGGGACAATAGATGACACCCGACCGCTCCC
CCCTTTTTGT
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