DY271402

Overview
NameDY271402
Unique NameDY271402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1095
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.949e-38
Identity = 70/135 (51.85%), Postives = 87/135 (64.44%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   43 GDTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR 176          

HSP 2 Score: 37.7354 bits (86), Expect = 1.949e-38
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  174 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 245          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.538e-38
Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYC 452
            G +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYC++R+  + S YC
Sbjct:   45 GSTSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYC 162          

HSP 2 Score: 45.0542 bits (105), Expect = 2.538e-38
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVL 675
            QYYGRGP Q++WN NY +CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+
Sbjct:  175 QYYGRGPIQISWNYNYGQCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVI 237          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.744e-37
Identity = 68/135 (50.37%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   43 GNTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR 176          

HSP 2 Score: 37.7354 bits (86), Expect = 2.744e-37
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  174 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 245          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.656e-37
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G + + CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGR 180          

HSP 2 Score: 37.3502 bits (85), Expect = 4.656e-37
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  178 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 249          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.895e-37
Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCY--PYCPCSLAR 482
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  C ARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYC+ ++ +  SDYC   P  PC+  R
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGR 196          

HSP 2 Score: 36.5798 bits (83), Expect = 7.895e-37
Identity = 26/68 (38.24%), Postives = 35/68 (51.47%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVL 675
            PG+ YYGRGP QL++N NY   G+ + VDL   S P    T      K +  F    + +KP  H V+
Sbjct:  194 PGRKYYGRGPIQLSFNFNYGPAGRAIGVDLL--SNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVI 259          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.903e-37
Identity = 68/135 (50.37%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CG G    +   G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   43 GNTNDYCGPGNCQSQCPGG---SPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGR 174          

HSP 2 Score: 38.1206 bits (87), Expect = 7.903e-37
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  I   K +  F    ++ KP  H V+  + +P
Sbjct:  172 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQP 243          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.747e-36
Identity = 71/133 (53.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDYCY--PYCPCS 473
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S YC   P  PC+
Sbjct:   57 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCA 179          

HSP 2 Score: 44.669 bits (104), Expect = 1.747e-36
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  478 PG-QYYGRGPNQLTWNCNYLRCGKTLEVDL 564
            PG QY+GRGP QL+WN NY +CG+ + VDL
Sbjct:  180 PGKQYFGRGPMQLSWNYNYGQCGRAIGVDL 209          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.748e-36
Identity = 71/133 (53.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDYCY--PYCPCS 473
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S YC   P  PC+
Sbjct:   35 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCA 157          

HSP 2 Score: 44.669 bits (104), Expect = 1.748e-36
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  478 PG-QYYGRGPNQLTWNCNYLRCGKTLEVDL 564
            PG QY+GRGP QL+WN NY +CG+ + VDL
Sbjct:  158 PGKQYFGRGPMQLSWNYNYGQCGRAIGVDL 187          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.835e-36
Identity = 81/189 (42.86%), Postives = 102/189 (53.97%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCSLARAILWPRSKSTHLELQLLKVRKNPGGGLIQTIQTFLALNQLYQSS*AIWIWKTCKS 647
            G +A  CGSG       TG      ++G++I+R MF D+L +RN+  C  +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R+      YC P    PC+  R                 +  K  G  L+      +A + +     A W W T +S
Sbjct:   45 GNTADYCGSGCQSQCSSTG------DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNN-PDLVATDAVISFKTAFWFWMTPQS 226          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.535e-36
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 3
Query:   87 GGSAQNCGSG-----AVCGE-----RDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            G ++  CG G     A CG        T   + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+YC P    PC+
Sbjct:   44 GSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCA 184          

HSP 2 Score: 38.1206 bits (87), Expect = 8.535e-36
Identity = 29/74 (39.19%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ YYGRGP QL+ N NY   G+ + VDL +   P    T      K +  F   A+A KP  H V+  Q  P
Sbjct:  185 PGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLR--NPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSP 256          
The following BLAST results are available for this feature:
BLAST of DY271402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_SOLTU1.949e-3851.85Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA2.538e-3851.64Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI3_SOLTU2.744e-3750.37Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC4.656e-3749.63Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_ORYSJ7.895e-3749.31Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU7.903e-3750.37Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_GOSHI1.747e-3653.38Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_GOSHI1.748e-3653.38Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIB_VITVI6.835e-3642.86Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SECCE8.535e-3647.52Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271402 ID=DY271402; Name=DY271402; organism=Citrus clementina; type=EST; length=1095bp
GGATAATTGATATTATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCC
TTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACA
GAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACT
GTTATCCTTACTGTCCATGTTCCCTTGCCAGGGCAATACTATGGCCGAGG
TCCAAATCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAAAAACCC
TGGAGGTGGACTTATTCAAACAATCCAAACCTTCTTGGCACTGAACCAGT
TATATCAATCAAGTTAAGCCATCTGGATTTGGAAGACCTGCAAAAGCACA
CAAGCCCTTCTGGCACCAAGTCCTTTACCCACAAAGGGAACCCCTCACCC
CATAGATTTATATGGAAACCAGGCCCAGAGGACCCCGATCCGACCATATA
GTAGAAAACCAGGAGGCAACCCAAACTCCCTAAAGATCCGCAAGACCCTC
ACTTCATCACCATATAAACACTCCCTCAACACCTTTTCAAAGCAAAAATT
CGATTTAAAGGCTTCTATACAATCCAAATGCTAAACCTCTAACACTACTA
CTACACCACTTCTACATCGCACCACTAACAAAGCACTGCAAACTCTCTAC
CTCCAAGCAATCCACAACTTAGACCTCGTCCTAGCTAAGAACACTAAAAC
TCGATCGTAACATCAAACACAATACTCTTCAAACGAACAAAACAATAAGA
GGACCTCTGTCCATCTCGACCGGTATGCTCTACAGACGCACGTGC
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