DY271406

Overview
NameDY271406
Unique NameDY271406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 2.231e-68
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 3
Query:   99 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY Q +CATSG+GL EGL WL
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWL 169          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 1.599e-66
Identity = 120/182 (65.93%), Postives = 147/182 (80.77%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTRPE 626
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W  Q T A SG+GLYEGL+WL  T   +PE
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNKPE 182          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.354e-64
Identity = 119/169 (70.41%), Postives = 138/169 (81.66%), Query Frame = 3
Query:   93 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +RI EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+ R W  Q TCA +G+GL EGL WL
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWL 177          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.022e-61
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKT 608
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W    TCA  GEGL+EGLDWL  T
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNT 176          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 5.884e-61
Identity = 108/176 (61.36%), Postives = 138/176 (78.41%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKT 608
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W    TCA  GEGL+EGLDWL  T
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNT 176          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.039e-57
Identity = 101/169 (59.76%), Postives = 132/169 (78.11%), Query Frame = 3
Query:   93 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY Q   A   +G+YEG DW+
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWV 181          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.721e-56
Identity = 105/180 (58.33%), Postives = 136/180 (75.56%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM ++E+ + LGL +L+ R W    T AT G GL E ++WL++T  +R
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.658e-55
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W    T AT G GL E ++WL++T  +R
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W    T AT G GL E ++WL++T  +R
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 3
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W    T AT G GL E ++WL++T  +R
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
The following BLAST results are available for this feature:
BLAST of DY271406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF3_DROME2.231e-6873.05ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH1.599e-6665.93Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO4.354e-6470.41Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH2.022e-6161.93ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP5.884e-6161.36ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFJ_DICDI1.039e-5759.76ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARL1_HUMAN9.721e-5658.33ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN1.658e-5558.33ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT2.166e-5558.33ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE2.166e-5558.33ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271406 ID=DY271406; Name=DY271406; organism=Citrus clementina; type=EST; length=889bp
ATAAGCTTCGTTCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGTT
CTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAA
GCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTG
GTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGA
GAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGA
ATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGA
TTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTT
GTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATT
GCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTAT
TTGCTAACAAACAGGATCTTCCCAATGCAATGAATGCTGCTGAAATTACT
GATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACACCCAGAG
CACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGGCTGGATTGGCTCC
TCAAAACATCCCTAACAAGGCCTGAAGCTGTTAAAATCTTTTTGCGGACT
GGCAATTCTGGATGCGGGGGTGAAAATTACTTATTTTTTTTTCTTTTTAA
CCCCTTTTTTTTGGAAACTTTTGGGTTGTGGGGTTGTTTGGGCCCAGGAA
TTTTTCAAATAATTTTGTAAAAAAAAATTGGTGGGTTGGAACTTGGCCCC
CAAGGGTTTGGGCTCGATTTAAATTCCGGAAATAGAAACAAATTGGGGGC
CCCCCCCATTTTTGAAATTTTTTTTTTCCTTTTCGTTTT
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