DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BUCAP (Oligoribonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum GN=orn PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.203e-27
Identity = 68/154 (44.16%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTETQS 682
            L+WIDLEMTGL  E+ RI+EIA +ITD KL    EGP + IHQ +E +  M EW    H+ +GL ++V  S   E +AE + + F+KK V   +  + GNSVY D  FL +YMP+L + F +  +DVS+IK L   W P      SFK+ + Q+
Sbjct:    8 LIWIDLEMTGLNSEIHRIIEIATVITDTKLNIISEGPVIAIHQKEEHIVIMDEWNTKIHKKNGLIKRVQKSIYNESKAESKTIFFLKKWVPIQSSPICGNSVYQDRKFLARYMPNLENYFHYRCIDVSTIKELVNRWCP------SFKKIKKQN 155          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURS3 (Oligoribonuclease OS=Burkholderia sp. (strain 383) GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.433e-27
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA +Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W P
Sbjct:    7 STSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 29.261 bits (64), Expect = 1.433e-27
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QEN 734
            IY+ F  K   H AL DI ESI ELKY +E+
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYREH 189          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRATW (Oligoribonuclease OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.439e-27
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 1.439e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQKL 175          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRATO (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.439e-27
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 1.439e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQEL 175          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRATH (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain LVS) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.439e-27
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 1.439e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQKL 175          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRATF (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.439e-27
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 1.439e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQKL 175          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURCH (Oligoribonuclease OS=Burkholderia cenocepacia (strain HI2424) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.428e-27
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W P
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 29.261 bits (64), Expect = 2.428e-27
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QEN 734
            IY+ F  K   H AL DI ESI ELKY +E+
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYREH 189          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURCA (Oligoribonuclease OS=Burkholderia cenocepacia (strain AU 1054) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.428e-27
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W P
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 29.261 bits (64), Expect = 2.428e-27
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QEN 734
            IY+ F  K   H AL DI ESI ELKY +E+
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYREH 189          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_DICNV (Oligoribonuclease OS=Dichelobacter nodosus (strain VCS1703A) GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-27
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            K  LVWIDLEMTGL  + D I+EIA I+TD +L    EGP + ++Q +  L  M  W Q HH ASGL E+V  S+    EAE Q + F+++        + GNS+  D  FL + MP L + F +  +DVS+IK L   WYP
Sbjct:    4 KNNLVWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQPEPILAQMDAWNQKHHGASGLIERVRQSSFNTLEAEAQTLSFLEQYSEKGRSPICGNSICQDRRFLSRLMPRLEAFFHYRNLDVSTIKELVARWYP 145          

HSP 2 Score: 28.1054 bits (61), Expect = 3.174e-27
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIF 740
            K   H+AL DI++SI EL++ ++ IF
Sbjct:  151 KNTTHQALQDIRDSIDELRHYRQRIF 176          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRATT (Oligoribonuclease OS=Francisella tularensis subsp. tularensis GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.175e-27
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 3.175e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQKL 175          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_BUCAP1.203e-2744.16Oligoribonuclease OS=Buchnera aphidicola subsp. Sc... [more]
ORN_BURS31.433e-2738.16Oligoribonuclease OS=Burkholderia sp. (strain 383)... [more]
ORN_FRATW1.439e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATO1.439e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATH1.439e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATF1.439e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_BURCH2.428e-2738.16Oligoribonuclease OS=Burkholderia cenocepacia (str... [more]
ORN_BURCA2.428e-2738.16Oligoribonuclease OS=Burkholderia cenocepacia (str... [more]
ORN_DICNV3.174e-2743.66Oligoribonuclease OS=Dichelobacter nodosus (strain... [more]
ORN_FRATT3.175e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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