DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_FRAT1 (Oligoribonuclease OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.175e-27
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          

HSP 2 Score: 30.0314 bits (66), Expect = 3.175e-27
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENI 737
            K+  H+AL+DI+ESI ELK+ ++ +
Sbjct:  151 KKNTHKALDDIRESIAELKFYRQKL 175          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_WIGBR (Oligoribonuclease OS=Wigglesworthia glossinidia brevipalpis GN=orn PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.127e-27
Identity = 62/153 (40.52%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            K  L+WIDLEMTGL +E DRI+EIA +ITD  +    EGP + I Q++E L  M  W    H  +GL ++V  S   E+ A    ++F+   V      + G+S+  D +FL KYMPDL   F +  +DVS IK L   W P+ L ++  K T
Sbjct:    9 KKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQSEEQLKKMNSWNIFTHTKNGLIDRVRKSKYNEKNAMIDTLKFISSWVPFGKSPICGSSINHDRLFLSKYMPDLEKYFHYRCLDVSVIKELARRWKPKILSKLKKKHT 161          

HSP 2 Score: 30.4166 bits (67), Expect = 4.127e-27
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFKTN 749
            K+  H+AL+DIK+SI EL + ++   K N
Sbjct:  158 KKHTHKALDDIKDSIKELLFYKDTFIKLN 186          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURVG (Oligoribonuclease OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=orn PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.086e-27
Identity = 57/152 (37.50%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE +A  Q+  F+   V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W P
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAQAAAQLQAFLADYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 29.261 bits (64), Expect = 9.086e-27
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QEN 734
            IY+ F  K   H AL DI ESI ELKY +E+
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYREH 189          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURCM (Oligoribonuclease OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.182e-26
Identity = 57/152 (37.50%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE +A  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W P
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.1054 bits (61), Expect = 1.182e-26
Identity = 16/27 (59.26%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY 722
            IY+ F  K   H AL DI ESI ELKY
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKY 185          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEF5 (Oligoribonuclease OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.545e-26
Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD  L    EGP + IHQ+ E L  M EW    H  SGLT++V  S ++  EAE Q + F+++ V      + GNS+  D  FL ++M  L S F +  +DVS++K L   W P D+++ SFK+  T
Sbjct:    7 LIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHQSDEILAGMDEWNTRQHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMKALESYFHYRNLDVSTLKELAARWAP-DVRD-SFKKGST 156          

HSP 2 Score: 26.5646 bits (57), Expect = 1.545e-26
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +++  K
Sbjct:  153 KGSTHLALDDIRESIAELQHYRKHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEAE (Oligoribonuclease OS=Pseudomonas aeruginosa GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.545e-26
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD  L    EGP + IHQ +E L  M EW    H  SGLT++V  S ++  EAE Q + F+++ V   +  + GNS+  D  FL ++MP L   F +  +DVS++K L   W P+  +  SFK+  T
Sbjct:    7 LIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEILAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLEGYFHYRNLDVSTLKELAARWAPQVRE--SFKKGNT 156          

HSP 2 Score: 27.335 bits (59), Expect = 1.545e-26
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +++  K
Sbjct:  153 KGNTHLALDDIRESIAELRHYRDHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEAB (Oligoribonuclease OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.545e-26
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD  L    EGP + IHQ +E L  M EW    H  SGLT++V  S ++  EAE Q + F+++ V   +  + GNS+  D  FL ++MP L   F +  +DVS++K L   W P+  +  SFK+  T
Sbjct:    7 LIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEILAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLEGYFHYRNLDVSTLKELAARWAPQVRE--SFKKGNT 156          

HSP 2 Score: 27.335 bits (59), Expect = 1.545e-26
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +++  K
Sbjct:  153 KGNTHLALDDIRESIAELRHYRDHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEA7 (Oligoribonuclease OS=Pseudomonas aeruginosa (strain PA7) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.545e-26
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD  L    EGP + IHQ +E L  M EW    H  SGLT++V  S ++  EAE Q + F+++ V   +  + GNS+  D  FL ++MP L   F +  +DVS++K L   W P+  +  SFK+  T
Sbjct:    7 LIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVLAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLEGYFHYRNLDVSTLKELAARWAPQVRE--SFKKGNT 156          

HSP 2 Score: 27.335 bits (59), Expect = 1.545e-26
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +++  K
Sbjct:  153 KGNTHLALDDIRESIAELRHYRDHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_AERS4 (Oligoribonuclease OS=Aeromonas salmonicida (strain A449) GN=orn PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.545e-26
Identity = 61/146 (41.78%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEIS 658
            LVWID+EMTGL  E + +LEIA I+TD  L    EGP + IHQ+ E L  M +W  N H  SGL  +V  S   E  A  + ++F+++ V   T  L GNS+  D  F+ K+M +L + F +  VDVS+IK L   W P  L + +
Sbjct:    8 LVWIDMEMTGLDPEENVVLEIATIVTDKDLNVLAEGPVIAIHQSDEELAKMDDWNVNTHTRSGLVARVKESQYDETRAVAETLDFIRQWVPERTSPLCGNSIGQDRRFMVKHMSELEAFFHYRNVDVSTIKELVRRWQPELLDQFT 153          

HSP 2 Score: 31.5722 bits (70), Expect = 1.545e-26
Identity = 13/28 (46.43%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K   H AL+DI+ESI EL++ + ++FK
Sbjct:  153 TKSGSHMALDDIRESIAELRFYRSHVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_COREF (Oligoribonuclease OS=Corynebacterium efficiens GN=orn PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.999e-26
Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            LVW+DLEMTGL +E   I+E+A ++TD  L    EG DLV+H T E L  M ++    H++SGLT  +  S ++ ++AE  V+  ++++     P  LAGNS+  D  F+++ MP L +   + +VDVSS+K L   W PR
Sbjct:   21 LVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARMDDFVTRMHDSSGLTPLIRASTVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQMPRLDAALHYRMVDVSSVKELARRWCPR 161          

HSP 2 Score: 34.6538 bits (78), Expect = 1.999e-26
Identity = 19/39 (48.72%), Postives = 23/39 (58.97%), Query Frame = 3
Query:  624 CPGILEIYRKFPSKEQKHRALNDIKESIMELKY*QENIF 740
            CP    +Y K P+K   HRAL DI ESI EL Y + + F
Sbjct:  159 CP---RVYYKQPTKGLAHRALADIVESIRELDYYRRSFF 194          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_FRAT13.175e-2741.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_WIGBR4.127e-2740.52Oligoribonuclease OS=Wigglesworthia glossinidia br... [more]
ORN_BURVG9.086e-2737.50Oligoribonuclease OS=Burkholderia vietnamiensis (s... [more]
ORN_BURCM1.182e-2637.50Oligoribonuclease OS=Burkholderia ambifaria (strai... [more]
ORN_PSEF51.545e-2642.11Oligoribonuclease OS=Pseudomonas fluorescens (stra... [more]
ORN_PSEAE1.545e-2641.45Oligoribonuclease OS=Pseudomonas aeruginosa GN=orn... [more]
ORN_PSEAB1.545e-2641.45Oligoribonuclease OS=Pseudomonas aeruginosa (strai... [more]
ORN_PSEA71.545e-2641.45Oligoribonuclease OS=Pseudomonas aeruginosa (strai... [more]
ORN_AERS41.545e-2641.78Oligoribonuclease OS=Aeromonas salmonicida (strain... [more]
ORN_COREF1.999e-2640.43Oligoribonuclease OS=Corynebacterium efficiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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