DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_MYCA1 (Oligoribonuclease OS=Mycobacterium avium (strain 104) GN=orn PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.000e-26
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            LVWID EMTGL +  D+++EIA ++TD +L    +G D+VIH     L +MGE     H  SGL ++V  S +    AE+ V+++++ +V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WYPR
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVTEMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPALDSYLHYRMIDVSSIKELCRRWYPR 145          

HSP 2 Score: 28.8758 bits (63), Expect = 2.000e-26
Identity = 16/33 (48.48%), Postives = 19/33 (57.58%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QENIF 740
            IY   P K   HRAL DI ESI EL++ +   F
Sbjct:  146 IYFGQPVKGLTHRALADIHESIRELQFYRRTAF 178          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_NEIMA (Oligoribonuclease OS=Neisseria meningitidis serogroup A GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.008e-26
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            K  L W+D+EMTGL  E DRI+E+A IITD  L    +     IHQ+ E LD+M EW    H  +GLT++V  S+ TE E E+++++F+ + V      + GNS++ D  F+ KYMP L + F +  +DVS++K L   W P
Sbjct:    4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNP 145          

HSP 2 Score: 25.7942 bits (55), Expect = 2.008e-26
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QEN 734
            K   H+AL+DI ESI E+++ +E+
Sbjct:  153 KRGSHKALDDILESIEEMRHYREH 176          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ACISJ (Oligoribonuclease OS=Acidovorax sp. (strain JS42) GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.268e-26
Identity = 66/169 (39.05%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  167 LENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTE 673
            + +  N   P   +    LVW+D EM+GL  E +R+LEIA ++T   LT  VEGP   IHQ    LD M  W +  H  SGL +KV  S +TE +AE++++ F+ + V      + GNS+  D  FL KYMP L + F +  VDVS++K L   W P      SFK+ +
Sbjct:    1 MSDTANPTVPALAKSDQNLVWLDCEMSGLNPETERLLEIAVVVTSADLTLRVEGPVFAIHQADAVLDGMDAWNKGTHGRSGLIDKVRASTVTEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVKYMPKLEAFFHYRNVDVSTLKELAKRWKPEAYS--SFKKAQ 167          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_MYCUA (Oligoribonuclease OS=Mycobacterium ulcerans (strain Agy99) GN=orn PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.603e-26
Identity = 60/141 (42.55%), Postives = 85/141 (60.28%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+VIH     L SM +   + H  SGLTE+V  S +    AE  V++++ ++V    T  LAGNS+  D  F+ + MP L +   + ++DVSSIK LC  WYPR
Sbjct:    5 LVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVADMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRSFIARDMPALDAFLHYRMIDVSSIKELCRRWYPR 145          

HSP 2 Score: 30.8018 bits (68), Expect = 2.603e-26
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QENIF 740
            IY   P K   HRAL DI ESI EL+Y +   F
Sbjct:  146 IYFGQPPKGLAHRALADIHESIRELQYYRRTAF 178          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEPK (Oligoribonuclease OS=Pseudomonas putida (strain KT2440) GN=orn PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.407e-26
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD +L    EGP + IH + E L  M EW    H ASGLT++V  S ++  EAE Q + F+++ V      + GNS+  D  FL ++M +L + F +  +DVS++K L   W P D+++ SFK+  T
Sbjct:    7 LIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLENYFHYRNLDVSTLKELAARWAP-DVRD-SFKKGNT 156          

HSP 2 Score: 28.4906 bits (62), Expect = 3.407e-26
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +E+  K
Sbjct:  153 KGNTHLALDDIRESIAELRHYREHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEP1 (Oligoribonuclease OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=orn PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.407e-26
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  + D I+E+A I+TD +L    EGP + IH + E L  M EW    H ASGLT++V  S ++  EAE Q + F+++ V      + GNS+  D  FL ++M +L + F +  +DVS++K L   W P D+++ SFK+  T
Sbjct:    7 LIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLENYFHYRNLDVSTLKELAARWAP-DVRD-SFKKGNT 156          

HSP 2 Score: 28.4906 bits (62), Expect = 3.407e-26
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +E+  K
Sbjct:  153 KGNTHLALDDIRESIAELRHYREHFIK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SODGM (Oligoribonuclease OS=Sodalis glossinidius (strain morsitans) GN=orn PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.407e-26
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L I+Q+   L  M +W    H ASGL ++V  SAL E  A  Q + F+   V      + GNS+  D  FL +YMP L + F +  +DVS++K L   W P  L  +    T
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIYQSDAQLALMNDWNVRTHTASGLVDRVRQSALDEEAAVAQTLAFLADWVPAGKSPICGNSIGQDRRFLFRYMPALEAYFHYRYLDVSTLKELARRWKPEILSGLKKNNT 157          

HSP 2 Score: 29.6462 bits (65), Expect = 3.407e-26
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H+AL+DI+ES+ EL Y +E+  +
Sbjct:  154 KNNTHQALDDIRESVAELAYYREHFIR 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ACIAC (Oligoribonuclease OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=orn PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.868e-26
Identity = 66/150 (44.00%), Postives = 88/150 (58.67%), Query Frame = 2
Query:  224 VWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTE 673
            VW+D EMTGL  E DR+LEIA ++T  +L   VEGP   IHQ+   LD M  W +  H  SGL EKV  S +TE EAE+ ++EF+ + V      + GNS+  D  FL +YMP L + F +  VDVS++K L   W P      SFK+ +
Sbjct:   21 VWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTHGRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAFFHYRNVDVSTLKELSRRWKPE--VYASFKKAQ 168          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_MYCPA (Oligoribonuclease OS=Mycobacterium paratuberculosis GN=orn PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.411e-26
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            LVWID EMTGL +  D+++EIA ++TD +L    +G D+VIH     L +MGE     H  SGL ++V  S +    AE+ V+++++ +V    T  LAGNS+  D  F+ + MP L +   + ++DVSSIK LC  WYPR
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVTEMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPALDAYLHYRMIDVSSIKELCRRWYPR 145          

HSP 2 Score: 28.8758 bits (63), Expect = 4.411e-26
Identity = 16/33 (48.48%), Postives = 19/33 (57.58%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QENIF 740
            IY   P K   HRAL DI ESI EL++ +   F
Sbjct:  146 IYFGQPVKGLTHRALADIHESIRELQFYRRTAF 178          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_NEIMF (Oligoribonuclease OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.430e-26
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            K  L W+D+EMTGL  E DRI+E+A IITD  L    +     +HQ+ E LD+M EW    H  +GLT++V  S  TE E E+++++F+ + V G  TP + GNS++ D  F+ KYMP L + F +  +DVS++K L   W P
Sbjct:    4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATP-MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNP 145          

HSP 2 Score: 25.7942 bits (55), Expect = 4.430e-26
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QEN 734
            K   H+AL+DI ESI E+++ +E+
Sbjct:  153 KRGSHKALDDILESIEEMRHYREH 176          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_MYCA12.000e-2642.55Oligoribonuclease OS=Mycobacterium avium (strain 1... [more]
ORN_NEIMA2.008e-2641.55Oligoribonuclease OS=Neisseria meningitidis serogr... [more]
ORN_ACISJ2.268e-2639.05Oligoribonuclease OS=Acidovorax sp. (strain JS42) ... [more]
ORN_MYCUA2.603e-2642.55Oligoribonuclease OS=Mycobacterium ulcerans (strai... [more]
ORN_PSEPK3.407e-2641.45Oligoribonuclease OS=Pseudomonas putida (strain KT... [more]
ORN_PSEP13.407e-2641.45Oligoribonuclease OS=Pseudomonas putida (strain F1... [more]
ORN_SODGM3.407e-2642.00Oligoribonuclease OS=Sodalis glossinidius (strain ... [more]
ORN_ACIAC3.868e-2644.00Oligoribonuclease OS=Acidovorax avenae subsp. citr... [more]
ORN_MYCPA4.411e-2641.84Oligoribonuclease OS=Mycobacterium paratuberculosi... [more]
ORN_NEIMF4.430e-2642.66Oligoribonuclease OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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