DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_YERP3 (Oligoribonuclease OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=orn PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.235e-31
Identity = 70/152 (46.05%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   +R+AE Q +EF+K+ V      + GNSV  D  FL +YMP+L + F +  VDVS++K L   W P  L    FK+  T
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVRTHTGSGLVERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPELEAYFHYRYVDVSTLKELARRWKPEIL--AGFKKQNT 157          

HSP 2 Score: 30.4166 bits (67), Expect = 5.235e-31
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFKT 746
            K+  H+AL+DI+ES+ EL Y +E+  ++
Sbjct:  154 KQNTHQALDDIRESVAELAYYREHFIQS 181          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_AZOSE (Oligoribonuclease OS=Azoarcus sp. (strain EbN1) GN=orn PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.814e-31
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+W+D+EMTGL+ + DRI+EIA +ITD +L    E P + +HQ    LD+M EW +N H  SGLT++V  S + E +AE Q++ F++++V  +T  + GNS+  D  F+ +YMP L + F +  +DVS++K L   W P
Sbjct:    8 LIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVLDAMDEWNRNTHGKSGLTDRVKASLIGEADAEAQMLAFLQQHVPAHTSPMCGNSICQDRRFMARYMPHLEAWFHYRNLDVSTLKELAKRWRP 146          

HSP 2 Score: 31.5722 bits (70), Expect = 6.814e-31
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E+Y K   K+ KH AL DI+ESI EL++ ++N  +
Sbjct:  147 EVY-KGVEKKGKHEALADIRESIAELRHYRDNFLR 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ALCBS (Oligoribonuclease OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-30
Identity = 62/139 (44.60%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL  E DRI+EIA I+TD +L    EGP L +HQ+   LD M EW   HH  SGL  +V  S + +  AE Q + F+++ V      + GNS+  D  FL  YMP L + F +  +DVS++K L   W P
Sbjct:    8 LIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAEGPVLAVHQSDALLDGMDEWNTTHHNNSGLVARVKASTVNDAAAESQTIAFLEQYVEAGMSPMCGNSICQDRRFLANYMPKLEAFFHYRNLDVSTLKELARRWKP 146          

HSP 2 Score: 33.4982 bits (75), Expect = 1.156e-30
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QEN 734
            SKE KH AL+DI+ESI EL Y +E+
Sbjct:  153 SKENKHLALDDIRESIAELVYYREH 177          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_HALHL (Oligoribonuclease OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=orn PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.162e-30
Identity = 69/139 (49.64%), Postives = 88/139 (63.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL    DRI+EIA ++TD  L    EGP L IHQ +  LDSM EW    H  SGLTE+V  S +TE EAE QV+ F+K+ V   T  + GNS+  D  FL ++MPDL + F +  +DVS++K L   W P
Sbjct:    8 LIWIDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAEGPVLAIHQDRSLLDSMDEWNTRQHGRSGLTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCGNSICQDRRFLARWMPDLEAYFHYRHIDVSTLKELARRWSP 146          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_HAEDU (Oligoribonuclease OS=Haemophilus ducreyi GN=orn PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.162e-30
Identity = 72/150 (48.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+WIDLEMTGL    DRI+EIA I+TD  L    +GP L +HQ    L  M EWC   H A+GL E+V  S LTER AE Q ++F+K+ V   +  + GNSV  D  FL +YMPDLA  F +  +DVS++K L   W P  LQ+ S K +
Sbjct:    9 LIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLLSKMNEWCIKTHTANGLIERVKQSKLTERAAELQTLDFLKQWVMKGSSPICGNSVAQDKRFLYQYMPDLADYFHYRHLDVSTLKELARRWKPEILQQFSKKNS 158          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_CHRVO (Oligoribonuclease OS=Chromobacterium violaceum GN=orn PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.505e-30
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+W+D+EMTGL  + DRI+E+A I+TD  L    E P LVIHQ    LD M +W +N H  SGL EKV +S ++E EAE+ ++EF+ ++V      + GN+++ D  F+ ++MP L + F +  +DVS++K LC  W P
Sbjct:    8 LIWLDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAESPVLVIHQPDAILDGMDDWNKNTHGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCGNTIHQDRRFMARWMPKLEAYFHYRNLDVSTLKELCKRWRP 146          

HSP 2 Score: 29.6462 bits (65), Expect = 1.505e-30
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K  KH AL DI ESI E++Y +E+  K
Sbjct:  154 KRGKHEALADILESIEEMRYYREHFLK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_YERE8 (Oligoribonuclease OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.505e-30
Identity = 69/152 (45.39%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   + +AE Q +EF+K+ V   T  + GNSV  D  FL +YMP+L + F +  +DVS++K L   W P  L    FK+  T
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEIL--AGFKKQNT 157          

HSP 2 Score: 30.0314 bits (66), Expect = 1.505e-30
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL+DI+ES+ EL Y +E+  +
Sbjct:  154 KQNTHQALDDIRESVAELAYYREHFIQ 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_RHOSR (Oligoribonuclease OS=Rhodococcus sp. (strain RHA1) GN=orn PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.955e-30
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTY-TPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            LVWID EMTGL++  D+++EIA ++TD +L    EG D+VIH   + L +M +     HE SGLT++V  S +T  EAE+QV+ +++++V    T  LAGNS+  D  F+ + MPDL +   + ++DVSSIK L   WYPR
Sbjct:    5 LVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVTKMHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPDLDTYLHYRMIDVSSIKELSRRWYPR 145          

HSP 2 Score: 34.2686 bits (77), Expect = 1.955e-30
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QENIF 740
            IY   P K   HRAL DI+ESI ELKY ++  F
Sbjct:  146 IYFGQPEKGLAHRALADIRESIRELKYYRKTAF 178          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ACIAD (Oligoribonuclease OS=Acinetobacter sp. (strain ADP1) GN=orn PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.959e-30
Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL  + D+I+EIA IITD  L    EGP L +HQ    L++M EW    H  SGL E+V  S LT R+ E Q +EF+KK V   T  + GNS+  D  F+ + MP+L   F +  +DVSS+K L   W P
Sbjct:    9 LIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRILNAMDEWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCGNSICQDRRFMHRLMPELEQYFHYRNLDVSSVKELAKRWRP 147          

HSP 2 Score: 30.4166 bits (67), Expect = 1.959e-30
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFKTN 749
            K   H A++DI++SI ELKY +E  F  N
Sbjct:  155 KNASHLAMDDIRDSISELKYYREYFFIKN 183          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_RALSO (Oligoribonuclease OS=Ralstonia solanacearum GN=orn PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.539e-30
Identity = 64/139 (46.04%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            LVW+D+EMTGL  E DRI+E+A ++TD +L    EGP LVIHQ  E LD M  W +  H  SGL +KV  S  TE +AE  +++F+KK V      + GNS+  D  F+ +YMP L + F +  +DVS++K LC  W P
Sbjct:   30 LVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLKELCKRWQP 168          

HSP 2 Score: 26.9498 bits (58), Expect = 2.539e-30
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K Q+H A  DI ESI EL+Y +++  +
Sbjct:  176 KRQQHTAYADIVESIEELRYYRQHFIR 202          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_YERP35.235e-3146.05Oligoribonuclease OS=Yersinia pseudotuberculosis s... [more]
ORN_AZOSE6.814e-3142.45Oligoribonuclease OS=Azoarcus sp. (strain EbN1) GN... [more]
ORN_ALCBS1.156e-3044.60Oligoribonuclease OS=Alcanivorax borkumensis (stra... [more]
ORN_HALHL1.162e-3049.64Oligoribonuclease OS=Halorhodospira halophila (str... [more]
ORN_HAEDU1.162e-3048.00Oligoribonuclease OS=Haemophilus ducreyi GN=orn PE... [more]
ORN_CHRVO1.505e-3043.17Oligoribonuclease OS=Chromobacterium violaceum GN=... [more]
ORN_YERE81.505e-3045.39Oligoribonuclease OS=Yersinia enterocolitica serot... [more]
ORN_RHOSR1.955e-3044.68Oligoribonuclease OS=Rhodococcus sp. (strain RHA1)... [more]
ORN_ACIAD1.959e-3046.76Oligoribonuclease OS=Acinetobacter sp. (strain ADP... [more]
ORN_RALSO2.539e-3046.04Oligoribonuclease OS=Ralstonia solanacearum GN=orn... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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