DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBCH (Oligoribonuclease OS=Vibrio cholerae GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.553e-30
Identity = 65/146 (44.52%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEIS 658
            L+WIDLEMTGL  E+ +I+E+A I+TD +L    EGP + IHQ +  L  M EWC   H ASGL  +V  S ++E EA  Q + F+K+ V      + GNS+  D  FL K+MP L + F +  +DVS+IK L   W P  L+E S
Sbjct:    8 LIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKEFS 153          

HSP 2 Score: 32.3426 bits (72), Expect = 2.553e-30
Identity = 16/35 (45.71%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E+ ++F SK   H AL+DI+ESI EL++ ++ +FK
Sbjct:  147 EVLKEF-SKTGSHLALDDIRESIAELQFYRKAVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBC3 (Oligoribonuclease OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.553e-30
Identity = 65/146 (44.52%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEIS 658
            L+WIDLEMTGL  E+ +I+E+A I+TD +L    EGP + IHQ +  L  M EWC   H ASGL  +V  S ++E EA  Q + F+K+ V      + GNS+  D  FL K+MP L + F +  +DVS+IK L   W P  L+E S
Sbjct:    8 LIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKEFS 153          

HSP 2 Score: 32.3426 bits (72), Expect = 2.553e-30
Identity = 16/35 (45.71%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E+ ++F SK   H AL+DI+ESI EL++ ++ +FK
Sbjct:  147 EVLKEF-SKTGSHLALDDIRESIAELQFYRKAVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PHOLL (Oligoribonuclease OS=Photorhabdus luminescens subsp. laumondii GN=orn PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.324e-30
Identity = 67/150 (44.67%), Postives = 90/150 (60.00%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+WIDLEMTGL  E DRI+EIA I+TD  L    EGP + +HQ+ E L  M +W    H  SGL E+V  S + +REAEK  +EF++K V      + GNSV  D  FL +YMP+L + F +  +DVS++K L   W P  L  +  + T
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATIVTDANLNILDEGPVIAVHQSDEQLALMDKWNVRTHTGSGLVERVKASKIDDREAEKATIEFLEKWVPAGASPICGNSVSQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEILAGLKKQNT 157          

HSP 2 Score: 30.0314 bits (66), Expect = 3.324e-30
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL+DI+ES+ EL Y +E+  +
Sbjct:  154 KQNTHQALDDIRESVAELAYYREHFIQ 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_MARAV (Oligoribonuclease OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=orn PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEI 655
            L+WIDLEMTGL  E +RI+E+A IITD +L    EGP + IHQ    L+ M EWC   H ASGLT++V  S ++E EAE+Q +EF+ K++      L GNS+  D  FL KYMP L + F +  +DVS++K L   W P  L+ +
Sbjct:    7 LIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAEGPVIAIHQPDSLLEQMDEWCTRTHGASGLTQRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQDRRFLVKYMPKLEAFFHYRNLDVSTVKELARRWRPDVLEGV 151          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ECOLI (Oligoribonuclease OS=Escherichia coli (strain K12) GN=orn PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.636e-30
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W P  L
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL 149          

HSP 2 Score: 30.4166 bits (67), Expect = 5.636e-30
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+A++DI+ES+ EL Y +E+  K
Sbjct:  153 TKQGTHQAMDDIRESVAELAYYREHFIK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ECOL6 (Oligoribonuclease OS=Escherichia coli O6 GN=orn PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.636e-30
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W P  L
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL 149          

HSP 2 Score: 30.4166 bits (67), Expect = 5.636e-30
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+A++DI+ES+ EL Y +E+  K
Sbjct:  153 TKQGTHQAMDDIRESVAELAYYREHFIK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ECOHS (Oligoribonuclease OS=Escherichia coli O9:H4 (strain HS) GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.636e-30
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W P  L
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL 149          

HSP 2 Score: 30.4166 bits (67), Expect = 5.636e-30
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+A++DI+ES+ EL Y +E+  K
Sbjct:  153 TKQGTHQAMDDIRESVAELAYYREHFIK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ECO24 (Oligoribonuclease OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.636e-30
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W P  L
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL 149          

HSP 2 Score: 30.4166 bits (67), Expect = 5.636e-30
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+A++DI+ES+ EL Y +E+  K
Sbjct:  153 TKQGTHQAMDDIRESVAELAYYREHFIK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHEON (Oligoribonuclease OS=Shewanella oneidensis GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.636e-30
Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ E L +M +W Q HH  SGL E+V  S + E EA  Q + F+ + V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W P  +    FK+  T
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETM--AGFKKQNT 157          

HSP 2 Score: 33.113 bits (74), Expect = 5.636e-30
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL DI+ESI EL+Y +  +FK
Sbjct:  154 KQNTHQALQDIQESIAELQYYRSKVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHEDO (Oligoribonuclease OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=orn PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.339e-30
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            L+WIDLEMTGL+ EVD ++EIA ++TD +L    +GP + IHQ+ E L  M +W Q HH  SGL ++V  S  TE +A +Q ++F+ + V      + GNS+  D  FL KYM +L   F +  VDVS+IK L   W P  ++
Sbjct:    8 LIWIDLEMTGLEPEVDVVIEIATLVTDSELNILAQGPVIAIHQSDETLAKMDDWNQKHHGQSGLIDRVKASQFTEADAIEQTIKFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEEYFHYRNVDVSTIKELVKRWSPETMK 150          

HSP 2 Score: 31.5722 bits (70), Expect = 7.339e-30
Identity = 13/28 (46.43%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+AL DI+ESI EL++ ++ +FK
Sbjct:  153 TKQGTHQALQDIQESIAELQFYRKEVFK 180          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_VIBCH2.553e-3044.52Oligoribonuclease OS=Vibrio cholerae GN=orn PE=3 S... [more]
ORN_VIBC32.553e-3044.52Oligoribonuclease OS=Vibrio cholerae serotype O1 (... [more]
ORN_PHOLL3.324e-3044.67Oligoribonuclease OS=Photorhabdus luminescens subs... [more]
ORN_MARAV4.416e-3046.90Oligoribonuclease OS=Marinobacter aquaeolei (strai... [more]
ORN_ECOLI5.636e-3045.77Oligoribonuclease OS=Escherichia coli (strain K12)... [more]
ORN_ECOL65.636e-3045.77Oligoribonuclease OS=Escherichia coli O6 GN=orn PE... [more]
ORN_ECOHS5.636e-3045.77Oligoribonuclease OS=Escherichia coli O9:H4 (strai... [more]
ORN_ECO245.636e-3045.77Oligoribonuclease OS=Escherichia coli O139:H28 (st... [more]
ORN_SHEON5.636e-3042.11Oligoribonuclease OS=Shewanella oneidensis GN=orn ... [more]
ORN_SHEDO7.339e-3043.36Oligoribonuclease OS=Shewanella denitrificans (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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