DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURPS (Oligoribonuclease OS=Burkholderia pseudomallei GN=orn PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.103e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.103e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURP0 (Oligoribonuclease OS=Burkholderia pseudomallei (strain 1106a) GN=orn PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.103e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.103e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_THICR (Oligoribonuclease OS=Thiomicrospira crunogena (strain XCL-2) GN=orn PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.109e-29
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL  + D+I+EIA ++TD +L    EGP + I   +  LD M  WC  HH  SGLT++V  S +T  +AE++ ++F+K  V      + GNS+  D  FL + MP+L   F +  +DVSS+K L   W P
Sbjct:    7 LIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLDGMDAWCTTHHGNSGLTKRVQESTITMAQAEQETIKFLKPYVPKGKSPMCGNSICQDRRFLIEQMPELEQFFHYRNLDVSSLKELARRWAP 145          

HSP 2 Score: 31.9574 bits (71), Expect = 2.109e-29
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIF 740
            K+  H AL+DI ESI ELKY ++N+F
Sbjct:  153 KKGAHLALDDIYESIEELKYYRQNLF 178          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BORA1 (Oligoribonuclease OS=Bordetella avium (strain 197N) GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.110e-29
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            LVW+D+EMTGL  E +RI+E+A ++T+  LT   EGP LV+HQ+   L++M  W ++ H  SGL +KV  S LTE +AE+Q+++F+ + V      L GN++  D  F+  YMP+L   F +  +DVS++K L   W P
Sbjct:    8 LVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQSDSVLEAMDNWNKSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCGNTISQDRRFMFAYMPNLERFFHYRNLDVSTLKELARRWAP 146          

HSP 2 Score: 31.5722 bits (70), Expect = 2.110e-29
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            +Y+ F  K+ +H AL DI ESI ELK+ +E+  K
Sbjct:  148 VYKSF-EKKSRHEALADIYESIDELKHYREHFLK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBVY (Oligoribonuclease OS=Vibrio vulnificus (strain YJ016) GN=orn PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 68/150 (45.33%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+WIDLEMTGL  +V +I+EIA I+TD +L    EGP L IHQ++E L  M EWC N H  SGL E+V  S +TE+EA +Q + F++K V      + GNS+  D  FL ++MP+L   F +  +DVS++K L   W P  L+  S + T
Sbjct:    8 LIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELEGYFHYRYIDVSTLKELTRRWNPEVLKGFSKQGT 157          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBVU (Oligoribonuclease OS=Vibrio vulnificus GN=orn PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 68/150 (45.33%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+WIDLEMTGL  +V +I+EIA I+TD +L    EGP L IHQ++E L  M EWC N H  SGL E+V  S +TE+EA +Q + F++K V      + GNS+  D  FL ++MP+L   F +  +DVS++K L   W P  L+  S + T
Sbjct:    8 LIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELEGYFHYRYIDVSTLKELTRRWNPEVLKGFSKQGT 157          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURP6 (Oligoribonuclease OS=Burkholderia pseudomallei (strain 668) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.738e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.738e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURMS (Oligoribonuclease OS=Burkholderia mallei (strain SAVP1) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.738e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.738e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURMA (Oligoribonuclease OS=Burkholderia mallei GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.738e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.738e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURM9 (Oligoribonuclease OS=Burkholderia mallei (strain NCTC 10229) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.738e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.738e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_BURPS2.103e-2941.55Oligoribonuclease OS=Burkholderia pseudomallei GN=... [more]
ORN_BURP02.103e-2941.55Oligoribonuclease OS=Burkholderia pseudomallei (st... [more]
ORN_THICR2.109e-2942.45Oligoribonuclease OS=Thiomicrospira crunogena (str... [more]
ORN_BORA12.110e-2942.45Oligoribonuclease OS=Bordetella avium (strain 197N... [more]
ORN_VIBVY2.192e-2945.33Oligoribonuclease OS=Vibrio vulnificus (strain YJ0... [more]
ORN_VIBVU2.192e-2945.33Oligoribonuclease OS=Vibrio vulnificus GN=orn PE=3... [more]
ORN_BURP62.738e-2941.55Oligoribonuclease OS=Burkholderia pseudomallei (st... [more]
ORN_BURMS2.738e-2941.55Oligoribonuclease OS=Burkholderia mallei (strain S... [more]
ORN_BURMA2.738e-2941.55Oligoribonuclease OS=Burkholderia mallei GN=orn PE... [more]
ORN_BURM92.738e-2941.55Oligoribonuclease OS=Burkholderia mallei (strain N... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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