DY271415

Overview
NameDY271415
Unique NameDY271415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GD+ SSIFDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ HMA  +
Sbjct:  284 FNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V MA+
Sbjct:  286 FIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G++ SSIFDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +A+
Sbjct:  285 FTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            FVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F+ D  S IFDA AGI L+ KF KLV+WYDNEWGYS RVVDLI H++K Q
Sbjct:  286 FIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDLIAHISKVQ 335          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RVVDLI ++AK
Sbjct:  284 FLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  314 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
BLAST of DY271415 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++AK
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
The following BLAST results are available for this feature:
BLAST of DY271415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
G3P_XENLA1.072e-1372.00Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_USTMA1.072e-1370.83Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_OMPOL1.072e-1370.83Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_GLOMM1.072e-1373.91Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_CHICK1.072e-1374.00Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3PC_CHOCR1.072e-1368.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_YEAST1.072e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_SCHPO1.072e-1374.47Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_JACOR1.072e-1374.00Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_SORMA1.400e-1376.09Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271415 ID=DY271415; Name=DY271415; organism=Citrus clementina; type=EST; length=615bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCTAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAATATGCAAGAAAATTTGGTGAACCAACTTATGTTTTGTTACCAA
GAAAACAATGTCCATTGAAAACTTGCTTTTTAAATTTTTCCTCAATTTAG
TATCGAAAAAAAAAAAAAAAAAAAAACCCCACTTTCTTGTACAAGTTGGG
CTTAAAAAAAAACCCTTGCTTAATCAATTTTTGGCACCAACACGGCCCCT
ACCGTCCAAAAAAAATTCTTTTTTTGCCCCCCCCCGAAACCCCCCAAAAT
GAATCCGAATACATG
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