DY271416

Overview
NameDY271416
Unique NameDY271416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1004
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3920 contig Ccv1_Contig3920:1..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.358e-11
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + I +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.358e-11
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + I +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + + +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + + +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + + +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH2_HUMAN (Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + + +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF   +I+ + + +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.952e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   + EIVQFF   +I+ + I +     G++TGEA+V+F S E A++A+ K K  IG RY+E+F S+
Sbjct:  113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187          
BLAST of DY271416 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.741e-11
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  130 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            I++MRGLP+    ++I  FF+  K+  DKI    R DG+ TG+A+V+F + E+A++ + K +  IG RY+ELF ST
Sbjct:  282 IVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKST 356          
The following BLAST results are available for this feature:
BLAST of DY271416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HNRH1_MOUSE1.358e-1145.33Heterogeneous nuclear ribonucleoprotein H OS=Mus m... [more]
HNRH1_HUMAN1.358e-1145.33Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
HNRH2_RAT3.026e-1144.00Heterogeneous nuclear ribonucleoprotein H2 OS=Ratt... [more]
HNRH2_PONAB3.026e-1144.00Heterogeneous nuclear ribonucleoprotein H2 OS=Pong... [more]
HNRH2_MOUSE3.026e-1144.00Heterogeneous nuclear ribonucleoprotein H2 OS=Mus ... [more]
HNRH2_HUMAN3.026e-1144.00Heterogeneous nuclear ribonucleoprotein H2 OS=Homo... [more]
HNRH2_BOVIN3.026e-1144.00Heterogeneous nuclear ribonucleoprotein H2 OS=Bos ... [more]
HNRH1_RAT3.952e-1144.00Heterogeneous nuclear ribonucleoprotein H OS=Rattu... [more]
SYM2_CAEEL6.741e-1143.42RNA-binding protein sym-2 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271416 ID=DY271416; Name=DY271416; organism=Citrus clementina; type=EST; length=1004bp
CAGGATTACTACTTTGCCGTGGCTTCAGAGGTGAATTATGAAGGGATCTA
TGATAATGATTTCCATGGAAGTCCTCCACCATCACGAGCTAAGAGGTACA
ATGACAAAGATCAAATGGAACATACTGAAATTTTGAAGATGCGTGGCCTT
CCTTTCTCTGTGAAGAAATCTGAAATAGTTCAATTCTTTAAAGACTACAA
GATAATTGAGGATAAGATACACATTGCATGCCGACCTGATGGTAAGGCTA
CCGGTGAGGCATATGTGGAGTTTGTTTCTGTAGAGGAGGCTAAGAGAGCA
ATGTGTAAAGACAAGATGACAATTGGTTCGAGGTATGTCGAGCTGTTCCC
TTCCACACCTGATGAAGCTCGGCGTGCTGAATCAAGATCAAGACAGTGAA
GAGGCGTTAATTGTGGCTAGAGGTTTTAACGGCTGAAATATATTTCTTTT
CATCTTTGTAGCTTTTACCAGCTGTGCTAGTATGCATGCACCCTCTGATT
TCACGTGAAGCTTTCATTCTGGTGCCACAATTTTTTTTTTGGGGGCTCAT
TTAGATTGTATGCATAGATTATTCCCCAATATAAATTGTCATCCTTTGGA
TATTTGAATTTTTATTTCCTTATAGAAGTTATAAACTTGAACCTTTTGTA
TATTGTTTGGCTTAAGGACCCTGTCACTTGGGTTGAACCAATCTCCTTGG
GTTCAAAAGAAAAAAAAAAGTGAATGCCCGCGGATTGCCCAAAAAAAAAA
AAAAAAAAAAACCCCCCTTTTTGGCCCAATGTTGGCTTTTAAAAAGCCTT
TGCTTTACATTTTGTCCCCCCAAAGGCCCCCTTCCGTCCAAAAAAAACTC
TTTCTTCCCCCCCCCCGAAACCCCCCAAATGAAGGAACAAAACAGGGCAA
AAGCTGTTTCCCCCGGCCCCCGGGCCCCGTCCCCAAAGCACCCAATTGCT
CTCTGCCCCACCAAACAAATCTGCCCCAGTCTAAAACCCTTCCCGACCCC
CTCT
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