DY271418

Overview
NameDY271418
Unique NameDY271418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length982
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 152.14 bits (383), Expect = 4.487e-36
Identity = 89/229 (38.86%), Postives = 120/229 (52.40%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKA-FFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT L        P+  FFA A +VRD L+  W  T ++Y   + K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+       ++W     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFT-LVKDRNVATPRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVKW-----LDTQVVLAMPYDTPVPGYKNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_PONAB (Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 9.995e-36
Identity = 88/229 (38.43%), Postives = 120/229 (52.40%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKAF-FATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT L        P+ + FA A +VRD L+  W  T ++Y   + K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+       ++W     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFT-LVKDRNVATPRDYLFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVKW-----LDTQVVLAMPYDTPVPGYKNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_RAT (Glycogen phosphorylase, brain form (Fragment) OS=Rattus norvegicus GN=Pygb PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.798e-35
Identity = 89/229 (38.86%), Postives = 119/229 (51.97%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKA-FFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT L        P+  FFA A +VRD L+  W  T ++Y   + K+ YYLS+EF  GR L N + NLGL  A  EA  +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+     + + W     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFT-LVKDRNVATPRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHTPNGVLW-----LDTQVVLAMPYDTPVPGYKNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.961e-35
Identity = 89/229 (38.86%), Postives = 118/229 (51.53%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKA-FFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT L        P+  FFA A +VRD L+  W  T ++Y   + K+ YYLS+EF  GR L N + NLGL  A  EA  +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+       + W     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFT-LVKDRNVATPRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVLW-----LDTQVVLAMPYDTPVPGYKNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 6.479e-35
Identity = 91/238 (38.24%), Postives = 119/238 (50.00%), Query Frame = 2
Query:  299 HAEFTPLFSPEKFELPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKL-------------GQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYG------------KNGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFW 937
            H E T   S    +   A+ A + S+RD+L+I+WN T + +   + K+ YYLS+EFL GRAL NA+ N+ +      A SK              G  LE+V+ QEPD            +CF+DSMAT   PAWGYGLRY+YG+F Q+I    Q E  + WL+ GNPWEIERN+V  PV FYG                WI  E+ L         VA    +PG K    +  R W
Sbjct:   74 HVETTLARSLYNCDDMAAYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDEGGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVL--------AVAYDFPVPGFKTSNVNNLRLW 303          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_SHEEP (Glycogen phosphorylase, brain form OS=Ovis aries GN=PYGB PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 8.461e-35
Identity = 86/228 (37.72%), Postives = 117/228 (51.32%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT +           + A A +VRD L+  W  T + Y   + K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+   +   +RW     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHSPEGVRW-----LDTQVVLAMPYDTPVPGYKNDTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGB_BOVIN (Glycogen phosphorylase, brain form OS=Bos taurus GN=PYGB PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 8.461e-35
Identity = 86/228 (37.72%), Postives = 117/228 (51.32%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGK---NGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            D A V  S   H  FT +           + A A +VRD L+  W  T + Y   + K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  LE +   E D            +CFLDSMATL   A+GYG+RY++G+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+   +   +RW     L+ ++   +   + +PG K    +T R WS
Sbjct:   24 DVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHSPEGVRW-----LDTQVVLAMPYDTPVPGYKNDTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 7.163e-34
Identity = 84/225 (37.33%), Postives = 115/225 (51.11%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGKNGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            + A +  S   H  FT +           +FA A +VRD L+  W  T ++Y     K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  +E +   E D            +CFLDSMATL   A+GYG+RY+YG+F Q+I    Q E A+DWL  GNPWE  R +   PV FYGK        K++D +  +   +   + +PG      +T R WS
Sbjct:   24 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVL--ALPYDTPVPGYMNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.222e-33
Identity = 86/226 (38.05%), Postives = 116/226 (51.33%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKA-FFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGKNGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            + A +      H  FT L        P+  FFA A +VRD L+  W  T +YY     K+ YYLS+EF  GR L N + NLGL  A  EA+ +LG  +E +   E D            +CFLDSMATL   A+GYG+RY+YG+F Q+I    Q E A+DWL  GNPWE  R +   PV FYG+        K++D +  +   +   + +PG      +T R WS
Sbjct:   24 NVAELKKGFNRHLHFT-LVKDRNVATPRDYFFALAHTVRDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQIEEADDWLRHGNPWEKARPEFMLPVHFYGRVEHTEAGTKWIDTQVVL--ALPYDTPVPGYLNNTVNTMRLWS 246          
BLAST of DY271418 vs. ExPASy Swiss-Prot
Match: PYG_DROME (Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.596e-33
Identity = 77/225 (34.22%), Postives = 117/225 (52.00%), Query Frame = 2
Query:  266 DTASVASSIQYHAEFTPLFSPEKFELPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLF*QRITKDGQEEVAEDWLDLGNPWEIERNDVSYPVKFYGKNGSWIRWEKFLDLEEKI*KLVAMKSLLPGIKLKPQSTRRFWS 940
            +   V  +   H  +T +       L   +FA A +V+D+++  W  T ++Y   + K+ YYLS+E+  GR+L N + NLG+     EA+ +LG  +EN+   E D            +CFLDSMATL   A+GYG+RY+YG+F Q+I    Q E  +DWL  GNPWE  R +   PV FYG+       +K++D +      +   + +PG      +T R WS
Sbjct:   24 NVTEVKKNFNRHLHYTLVKDRNVSTLRDYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTMINLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFAQKIKNGEQVEEPDDWLRYGNPWEKARPEFMLPVNFYGRVIDTPEGKKWVDTQRVF--AMPYDNPIPGYNNNHVNTLRLWS 246          
The following BLAST results are available for this feature:
BLAST of DY271418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PYGB_HUMAN4.487e-3638.86Glycogen phosphorylase, brain form OS=Homo sapiens... [more]
PYGB_PONAB9.995e-3638.43Glycogen phosphorylase, brain form OS=Pongo abelii... [more]
PYGB_RAT3.798e-3538.86Glycogen phosphorylase, brain form (Fragment) OS=R... [more]
PYGB_MOUSE4.961e-3538.86Glycogen phosphorylase, brain form OS=Mus musculus... [more]
PHSG_YEAST6.479e-3538.24Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PYGB_SHEEP8.461e-3537.72Glycogen phosphorylase, brain form OS=Ovis aries G... [more]
PYGB_BOVIN8.461e-3537.72Glycogen phosphorylase, brain form OS=Bos taurus G... [more]
PYGL_HUMAN7.163e-3437.33Glycogen phosphorylase, liver form OS=Homo sapiens... [more]
PYGL_SHEEP1.222e-3338.05Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYG_DROME1.596e-3334.22Glycogen phosphorylase OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271418 ID=DY271418; Name=DY271418; organism=Citrus clementina; type=EST; length=982bp
GAGAATGGCACTTTCGCAATTTTCTTCAATGTCGACCCGACCTTCGGAAG
CGTTGGTGCAGTGCACTAGCTCTCTTTCTAGATTCATTGAATTCGGTTCC
AGAAACAGAACGTCGAAGCAGAAGCTTCTGCTGATCCGAACCTTCAACTC
TCGTCCTCCAACGACGTCGTTTTGCATCAAATGTGTCTCCAGTCAGCCGT
CGCCGAAAATCAAAGATCGCGTTACTGAAGAAGACACTTCAAGTTCTCAG
AATTCATCTGGTCCAGATACTGCCTCTGTTGCTTCAAGTATCCAATATCA
TGCAGAGTTCACTCCTTTATTTTCTCCTGAGAAATTTGAACTTCCAAAGG
CTTTCTTTGCTACTGCACAAAGTGTTCGTGATTCTCTCATAATTAACTGG
AATTCCACGTACGAGTACTATGAGAGGTTGAATGTGAAGCAGGCTTATTA
TTTATCAATGGAGTTTCTGCAGGGTAGAGCACTGTTGAATGCAATCGGAA
ATTTGGGGCTTACTGGTGCTTATGCAGAGGCTCTGAGCAAGCTTGGACAG
AGTCTTGAAAATGTGGTTTCTCAGGAACCGGATGCTGCACTTGGTAATGG
GGGACTTGGGCGTCTTGCCTCCTGTTTTCTGGACTCTATGGCAACACTAA
ATTACCCAGCATGGGGTTATGGACTTAGATACAAGTATGGGTTATTTTAA
CAGAGGATTACAAAAGATGGTCAAGAGGAAGTTGCTGAAGATTGGCTTGA
TTTGGGAAATCCCTGGGAAATAGAGAGAAATGATGTTTCATACCCAGTAA
AATTTTATGGCAAAAATGGTTCCTGGATCAGATGGGAAAAATTCCTGGAT
TTGGAGGAGAAGATATAAAAGCTGGTTGCTATGAAATCCCTATTACCGGG
TATAAAACTAAAACCCCAATCAACCCGGCGATTTTGGTCTACAATGGGTT
CCTTCGGAAAAATTTTGAACCCTTCCGGCTTT
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