DY271426

Overview
NameDY271426
Unique NameDY271426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.798e-16
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  418 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKSLPKLALAP 711
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             K +G KAK+NFP+        + + +++P+ + +   +P
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTI-SHAPRGVSESMNSP 121          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.961e-16
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  448 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKAN-----SPKSLP 693
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             K +G KAK+NFP+     +  +   +N      P+S+P
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQIPQMEPQSIP 172          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.479e-16
Identity = 69/219 (31.51%), Postives = 95/219 (43.38%), Query Frame = 1
Query:  397 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDET----PAAAPKSPV-------KANSPKSLPKLALAPCNPV*TQTSLIEHSRP--EFHNLVSFPE--------EKHPVKQL----------------GSMGLFPEEGNKESKPLGPPLKTSREPQPKKGNNFFILSTFPW 942
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+              + RG KAK+NFP+      PA+    PV          S  S     L P  P   Q+    HS+P  + +NL S+ E        ++H  + L                GSM       +  S+PL  P   + +P P+  +    L    W
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS---VHSQPLMQSYNL-SYSEMARQQQQFQQHHQQSLDLYDQMSFPLRFGHTGGSMMQSTSSSSSHSRPLFSP--AAVQPPPESASETGYLQDIQW 376          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.885e-15
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  427 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPD 633
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T             + RG KAK+NFP+
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPE 127          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.555e-14
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  385 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPA 645
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T             K++G  A  NFP  T A
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTA 159          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.643e-14
Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  382 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAA------PKSPVKANSPKS 687
            R     + V  V  A  +T  ++K  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT             ++RG  A  NF   TP  A      P SPVK    K+
Sbjct:   98 RAVKSESTVSPVVSATTTTTGEKK--FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF-SVTPTTATEKKAPPPSPVKKKKKKN 202          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.351e-13
Identity = 45/114 (39.47%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  361 PFTFSAGRKSHGSTAVKHVEQAKKST-----ERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPK 684
            PF FSAG         + V    ++T     E  R   YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T             ++RG KA +NFP       P+ PV+  + +
Sbjct:   67 PFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPE-PVRVTAKR 179          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.764e-13
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  421 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKS 660
            +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T             ++RG KA +NFP E     P++
Sbjct:  143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRA 223          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.304e-13
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  451 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDE 636
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T             K+RG KA VNFP E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.304e-13
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  451 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDE 636
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T             K+RG KA VNFP E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
The following BLAST results are available for this feature:
BLAST of DY271426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EF113_ARATH3.798e-1639.80Ethylene-responsive transcription factor ERF113 OS... [more]
EF114_ARATH4.961e-1645.98Ethylene-responsive transcription factor ERF114 OS... [more]
ABR1_ARATH6.479e-1631.51Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF112_ARATH1.885e-1556.52Ethylene-responsive transcription factor ERF112 OS... [more]
PTI6_SOLLC3.555e-1445.98Pathogenesis-related genes transcriptional activat... [more]
CRF2_ARATH4.643e-1442.59Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF1_TOBAC1.351e-1339.47Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF102_ARATH1.764e-1346.91Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF5_TOBAC2.304e-1360.32Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY2.304e-1360.32Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271426 ID=DY271426; Name=DY271426; organism=Citrus clementina; type=EST; length=957bp
CTGAAGAATCCATAACTCTCTCAAGCCAACAAAAGCAAATTTTACATTTA
ACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGCCTGAACAAACCAGA
AGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTAC
ATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCT
CTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCG
TCGACGATGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAA
GAGTCTGACATTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGC
TGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTA
CAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGG
AAGAATCAATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGC
TGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCA
ATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAAGATC
CGTGGGAAGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGC
TCCAAAGAGCCCAGTGAAGGCCAACTCCCCGAAATCCCTTCCCAAGCTTG
CCCTAGCCCCGTGCAACCCAGTTTGAACCCAAACTTCATTAATTGAACAC
TCCCGACCAGAGTTCCACAACCTGGTGAGTTTTCCGGAGGAGAAACACCC
AGTGAAACAGTTAGGATCTATGGGCCTCTTCCCTGAGGAGGGGAATAAGG
AATCAAAACCCCTTGGGCCACCCCTTAAAACATCCAGGGAACCTCAACCC
AAAAAAGGGAATAACTTCTTTATATTGTCTACTTTTCCCTGGGTCACACT
AGCCCCC
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