DY271426

Overview
NameDY271426
Unique NameDY271426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.931e-13
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  373 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFP 630
            S+   +  S  V+ V   KK+   +    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +             K+RG+KA +NFP
Sbjct:   78 SSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.931e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  457 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFP 630
            ++RG+RQRPWGKWAAEIRDP++ VRVWLGTF+T             ++RG  A++NFP
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.134e-13
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  436 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAP--KSPVKANS 678
            T+  ++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T             + RG KAK NFP  T   +P   S V+++S
Sbjct:   19 TDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTENQSPSHSSTVESSS 101          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.705e-13
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  382 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPV 666
            RK  GS+ V            K   +YRG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP +   ++P  P+
Sbjct:    2 RKGRGSSVVGPALPVTAGGSVKEP-RYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPL 95          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.757e-13
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  442 RKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFP 630
            R++  QYRG+R+RPWGK+AAEIRDP K G RVWLGT+ T             ++RG KAK+NFP
Sbjct:   86 RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.757e-13
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  460 YRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKSLPKLALAPCNPV*TQTSLIEHSR 756
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T             ++RG KA +NFP       P+ PV+    +  P+ A +  +P  ++ SL +  R
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPE-PVRLTVKRRSPEPASSSISPA-SENSLPKRRR 200          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.757e-13
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  448 RKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKS 687
            +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             ++RG +A +NFP    +  P  PV+  S +S
Sbjct:  113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEP-DPVRITSKRS 192          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.144e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  382 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAP 654
            R+  GS+AV             ++ ++RG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP ++ +  P
Sbjct:    2 RRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPP 92          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.144e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  451 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDE 636
            +  YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T             K+RG KA +NFP E
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.144e-12
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  445 KRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKS 660
            + K  YRG+R RPWGK+AAEIRDPT +G RVWLGTF T             ++RG KA +NFP E     P++
Sbjct:  132 EEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRA 204          
The following BLAST results are available for this feature:
BLAST of DY271426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EF107_ARATH3.931e-1343.68Ethylene-responsive transcription factor ERF107 OS... [more]
CRF1_ARATH3.931e-1355.17Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF4_TOBAC5.134e-1345.78Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF83_ARATH6.705e-1341.05Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF99_ARATH8.757e-1354.69Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF2_NICSY8.757e-1342.00Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF101_ARATH8.757e-1346.91Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF82_ARATH1.144e-1239.56Ethylene-responsive transcription factor 3 OS=Arab... [more]
EF105_ARATH1.144e-1257.14Ethylene-responsive transcription factor ERF105 OS... [more]
EF103_ARATH1.144e-1249.32Ethylene-responsive transcription factor 6 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271426 ID=DY271426; Name=DY271426; organism=Citrus clementina; type=EST; length=957bp
CTGAAGAATCCATAACTCTCTCAAGCCAACAAAAGCAAATTTTACATTTA
ACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGCCTGAACAAACCAGA
AGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTAC
ATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCT
CTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCG
TCGACGATGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAA
GAGTCTGACATTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGC
TGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTA
CAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGG
AAGAATCAATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGC
TGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCA
ATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAAGATC
CGTGGGAAGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGC
TCCAAAGAGCCCAGTGAAGGCCAACTCCCCGAAATCCCTTCCCAAGCTTG
CCCTAGCCCCGTGCAACCCAGTTTGAACCCAAACTTCATTAATTGAACAC
TCCCGACCAGAGTTCCACAACCTGGTGAGTTTTCCGGAGGAGAAACACCC
AGTGAAACAGTTAGGATCTATGGGCCTCTTCCCTGAGGAGGGGAATAAGG
AATCAAAACCCCTTGGGCCACCCCTTAAAACATCCAGGGAACCTCAACCC
AAAAAAGGGAATAACTTCTTTATATTGTCTACTTTTCCCTGGGTCACACT
AGCCCCC
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