DY271437

Overview
NameDY271437
Unique NameDY271437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271437_ssr183 microsatellite DY271437_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
DY271437_ssr195 microsatellite DY271437_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3927 contig Ccv1_Contig3927:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: MTNB_BACCN (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=mtnB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  261 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAKPR 830
            +SEL +      W   T G+I+IKV  + +       L+S SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N   KE  I + E+IK +        + +PIIEN A+   L ++  K I +   A  VL+RNHGI VWG    +AK R
Sbjct:   11 LSELKKELTNRNWFPATSGNISIKVSHEPLT-----FLISASGKDKTKTTPDDFLLVDHQGNPVLETELRPSAETI--------LHTHIYNHTNAGCVLHVHTTDNNVIT--NLYEKEVMIRNQEIIKALNIWEEGATIHIPIIENYAHIPLLGEAFKKHIQSDCGA--VLIRNHGITVWGKDSFDAKKR 183          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: MTNB_SULSY (Methylthioribulose-1-phosphate dehydratase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=mtnB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 3
Query:  258 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            ++++L    Y  G+   T G+++ K+HDD +     +  ++ SG  K  +  ED+  +  +G  +               S    +    Y+K DAG VIH H   +  ++ +     + +I  +EMIK +       E+ VPI++N     +L +   KAI+  P    VL++ HGIY WG     AK
Sbjct:   16 VLNDLKIKLYNKGFFPATSGNLSYKLHDDPL-----IFAVTTSGKDKGTVTHEDVIFVDKDGKPVEKTKMKP--------SAETMVHSYIYQKTDAGCVIHVHTPANNFISYVYFEDGKVKIKDLEMIKALDIWKENAEIEVPIVDNFFDLKKLAEEAGKAIN--PDVPAVLIKTHGIYCWGRDEFEAK 189          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: MTNB_BACWK (Methylthioribulose-1-phosphate dehydratase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mtnB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 3
Query:  261 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAKPR 830
            +SE+ +   T  W   T G+I+IKV  D +       L++ SG  K +  P+D  +++  G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L +   K I     A  VL+RNHGI VWG    +AK R
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHDPLT-----FLITASGKDKTKTTPDDFLLVNHQGIPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATINIPIIENDAHIPTLGEKFRKHIQGDSGA--VLIRNHGITVWGRDSFDAKKR 183          
The following BLAST results are available for this feature:
BLAST of DY271437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTNB_BACCN8.953e-1229.47Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_SULSY2.605e-1126.46Methylthioribulose-1-phosphate dehydratase OS=Sulf... [more]
MTNB_BACWK2.605e-1128.42Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271437 ID=DY271437; Name=DY271437; organism=Citrus clementina; type=EST; length=910bp
ACAGTTTCAGTCAAAAAAATCACCAGTGTCTCTTTTCTAACAAAAAGATA
TTTTTACAGAACAGAAACAGAATTAGATTCATCATCAATCACTTGCCATT
AGTAGTCATTACAATTGGAAAAGCTCTCAAAGAGAACAGCTTCCTATCAA
GAGCAAAGCAAATGGCAACGTTGGCAGTGAACGGAGGAGGAGGAGCAGCA
GCAGCAACGCATACGCAGGCTTATTTGGAGGGCAGAGCAGTGAAGGAGAC
GAGGGTGTTGATATCAGAGCTCTGCCGTCATTTCTACACCCTTGGATGGG
TTTCTGGGACAGGTGGCAGCATCACCATCAAGGTCCATGATGACTCCATC
CCTAAACCTCAACAGCTCATCCTCATGTCACCTTCTGGTGTGCAGAAGGA
GAGAATGGAACCAGAGGACATGTATGTGTTATCTGGAAATGGGACTACGT
TGTCTTCACCATCTCCAAAACCGTACCCACATAAGCCTCCCAAGTGTTCA
GATTGTGCTCCCCTTTTCATGAAGGCATACGAGAAACGTGATGCAGGGGC
TGTTATCCACAGCCATGGCATAGAATCTTGCCTTGTGACAATGATCAATC
CAATGTCAAAAGAATTTCGTATAACTCACATGGAGATGATAAAAGGAATC
AAAGGGCATGGTTACTATGATGAACTCGTTGTTCCCATTATAGAGAACAC
AGCTTATGAAAATGAGCTCACTGATTCTCTTGCTAAAGCGATAGATGCCT
ATCCAAAAGCAACACCTGTGCTTGTTCGTAATCATGGCATATATGTTTGG
GGAGACCCCTGGATCAATGCTAAACCTCGGCCGAATGTAACCCCTACCTC
TTTGATGCTGCCAACCAACCCCTCCAACGGGGCCCGGGATGGCCCCCCCC
AAACCTGGCC
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