DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_STACT (Ornithine aminotransferase OS=Staphylococcus carnosus (strain TM300) GN=rocD PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.185e-59
Identity = 123/215 (57.21%), Postives = 151/215 (70.23%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RG+GPLL G LKVDFGD+  L+    E+    A  L EPIQGEAG+ +PP+GYLK +R L  + NIL IADEIQSGL RSG+  A+DW+ V+ D+ ILGKALGGGV+P+SAV AD EV+    PG HGSTFGGNPLA+AV+IA+LDV+ DEKLAERS  LGE  +  L KI       +KEVRGRGLF  VE ++ A P +       +KE G+L
Sbjct:  159 RGYGPLLEGFLKVDFGDVDQLKDAINEN---TAAILVEPIQGEAGINVPPEGYLKEIRKLADENNILFIADEIQSGLGRSGKTFATDWDGVKLDVYILGKALGGGVLPISAVAADSEVLDVFTPGSHGSTFGGNPLAAAVSIAALDVLEDEKLAERSRELGEYFQDELKKIDNP---VIKEVRGRGLFIGVELNEDARPYAE-----ALKEEGLL 362          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_STAES (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocD PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.548e-59
Identity = 118/215 (54.88%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RG+GPLL G  KV+FGD+  L+    ++    A  L EPIQGEAG+ +PP+GYLK +R+LC ++ IL IADEIQ+GL RSG++ A+DW+ V+PD+ ILGKALGGGV P+S VLAD EV+    PG HGSTFGGNPLASAV+IA++DVI DE L  RS  LGE  +  L KI+      +KEVRGRGLF  +E  ++A P      C  +KE+G+L
Sbjct:  159 RGYGPLLEGFRKVEFGDVNQLKAAINKN---TAAILVEPIQGEAGINVPPEGYLKTIRELCDEHQILFIADEIQAGLGRSGKLFATDWDHVKPDVYILGKALGGGVFPISVVLADNEVLDVFTPGSHGSTFGGNPLASAVSIAAIDVIIDEDLPGRSLELGEYFKSELKKIEHP---SIKEVRGRGLFIGIELHESARP-----YCEALKEQGLL 362          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_STAEQ (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocD PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.548e-59
Identity = 118/215 (54.88%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RG+GPLL G  KV+FGD+  L+    ++    A  L EPIQGEAG+ +PP+GYLK +R+LC ++ IL IADEIQ+GL RSG++ A+DW+ V+PD+ ILGKALGGGV P+S VLAD EV+    PG HGSTFGGNPLASAV+IA++DVI DE L  RS  LGE  +  L KI+      +KEVRGRGLF  +E  ++A P      C  +KE+G+L
Sbjct:  159 RGYGPLLDGFRKVEFGDVNQLKAAINKN---TAAILVEPIQGEAGINVPPEGYLKTIRELCDEHQILFIADEIQAGLGRSGKLFATDWDHVKPDVYILGKALGGGVFPISVVLADNEVLDVFTPGSHGSTFGGNPLASAVSIAAIDVIIDEDLPGRSLELGEYFKSELKKIEHP---SIKEVRGRGLFIGIELHESARP-----YCEALKEQGLL 362          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_MOUSE (Ornithine aminotransferase, mitochondrial OS=Mus musculus GN=Oat PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.682e-59
Identity = 114/218 (52.29%), Postives = 156/218 (71.56%), Query Frame = 1
Query:   13 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA*PT 666
            GFGP +PG   + + D+ ALE+  ++    +A F+ EPIQGEAGVI+P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR LA D E VRPDMV+LGKAL GG+ PVSAVL D E+ML I+PGEHGST+GGNPL   +AIA+L+V+ +E LAE +  +G  LR+ L K+     + V  VRG+GL NA+   +T     A+ +CL++++ G+LA PT
Sbjct:  196 GFGPFMPGFETIPYNDLPALERALQDPN--VAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDMVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKLPS---DVVTSVRGKGLLNAIVIRETK-DCDAWKVCLRLRDNGLLAKPT 407          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_EXISA (Ornithine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rocD PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.711e-58
Identity = 116/215 (53.95%), Postives = 146/215 (67.91%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RGFGPLLPG   V +GDI A E    E+    A F+ EPIQGEAG+IIPP GYLK   +LC ++N+L +ADEIQSGL RSG+  A +WE+V PDM ILGKALGGGV P+S V AD+E++    PG HGSTFGGNPLASAV++A+L+V+ +E L ERS  LG      L  I       +++VRGRGLF  +E  ++A P      C  +KERG+L
Sbjct:  158 RGFGPLLPGFKVVPYGDIDAFEAAITEN---TAAFIVEPIQGEAGIIIPPAGYLKRASELCKEHNVLFVADEIQSGLGRSGKWFAIEWEDVTPDMYILGKALGGGVFPISCVAADQEILSVFNPGSHGSTFGGNPLASAVSVAALEVLEEENLPERSLELGTYFMDRLKSIDNPM---IRDVRGRGLFIGIELTESARP-----YCEALKERGLL 361          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_RAT (Ornithine aminotransferase, mitochondrial OS=Rattus norvegicus GN=Oat PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.494e-58
Identity = 112/218 (51.38%), Postives = 156/218 (71.56%), Query Frame = 1
Query:   13 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA*PT 666
            GFGP +PG   + + D+ ALE+  ++    +A F+ EPIQGEAGVI+P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR LA D E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   +AIA+L+V+ +E LAE +  +G  LR+ L K+     + V  VRG+GL NA+   +T     A+ +CL++++ G+LA PT
Sbjct:  196 GFGPFMPGFETIPYNDLPALERALQDPN--VAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEEHLAENADKMGAILRKELMKLPS---DVVTAVRGKGLLNAIVIRETK-DCDAWKVCLRLRDNGLLAKPT 407          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_HUMAN (Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.494e-58
Identity = 113/218 (51.83%), Postives = 156/218 (71.56%), Query Frame = 1
Query:   13 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA*PT 666
            GFGP +PG   + + D+ ALE+  ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   VAIA+L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+ +CL++++ G+LA PT
Sbjct:  196 GFGPFMPGFDIIPYNDLPALERALQDPN--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPT 407          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_GEOSW (Ornithine aminotransferase OS=Geobacillus sp. (strain WCH70) GN=rocD PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.109e-57
Identity = 119/215 (55.35%), Postives = 151/215 (70.23%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RGFGP+LPG   + +GD+ AL+K    +    A F+FEPIQGEAG+ IPP+G+LK   ++C + N+L IADEIQSGL RSG+M A DWE V PDM ILGKALGGGV P+S V A+++++    PG HGSTFGGNPLA AV+IA+LDVI +EKL ERS  LG    + L +IQ   P+ +KEVRGRGLF  VE   +A P      C K+K+ G+L
Sbjct:  159 RGFGPMLPGIKIIPYGDVEALKKAITPN---TAAFIFEPIQGEAGINIPPEGFLKEAYNVCKENNVLYIADEIQSGLGRSGKMFACDWENVVPDMYILGKALGGGVFPISCVAANRDILGVFNPGSHGSTFGGNPLACAVSIAALDVIIEEKLPERSLELGNYFIEKLREIQH--PD-IKEVRGRGLFIGVELHTSARP-----YCEKLKQEGLL 362          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_BACSU (Ornithine aminotransferase OS=Bacillus subtilis GN=rocD PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.109e-57
Identity = 113/215 (52.56%), Postives = 147/215 (68.37%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RGFGP+LPG   + +GD+ AL +    +    A FLFEPIQGEAG++IPP+G+L+    +C + N+L IADEIQ+GL R+G+  A DW+ + PDM ILGKALGGGV P+S + AD+E++    PG HGSTFGGNPLA AV+IASL+V+ DEKLA+RS  LGE  +  L  I       +KEVRGRGLF  VE  + A P      C ++KE G+L
Sbjct:  162 RGFGPMLPGIKLIPYGDVEALRQAITPN---TAAFLFEPIQGEAGIVIPPEGFLQEAAAICKEENVLFIADEIQTGLGRTGKTFACDWDGIVPDMYILGKALGGGVFPISCIAADREILGVFNPGSHGSTFGGNPLACAVSIASLEVLEDEKLADRSLELGEYFKSELESIDSP---VIKEVRGRGLFIGVELTEAARP-----YCERLKEEGLL 365          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_MACCJ (Ornithine aminotransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=rocD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.449e-57
Identity = 121/215 (56.28%), Postives = 149/215 (69.30%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            RG+GPLL G   V+FGDI   E+I        A  L EPIQGEAG+ IP DG+LK VRD+C++ N+L IADEIQ+GL RSG+M A+DW+ V PDM ILGKALGGGV P+S VLADKE++     G HGSTFGGNPLA AV+ A+LDV+ DEKLAERS  LGE  +  L +I       +KEVRG+GLF  VE ++ A P      C ++KE G+L
Sbjct:  159 RGYGPLLGGFKLVEFGDI---EQIKSAITPNTAAVLLEPIQGEAGINIPEDGFLKQVRDVCTENNVLFIADEIQAGLGRSGKMFATDWDNVVPDMYILGKALGGGVFPISCVLADKEILEVFNAGSHGSTFGGNPLACAVSNAALDVLVDEKLAERSLELGEYFQSKLKEIDNP---VIKEVRGKGLFIGVELNEAARP-----YCEQLKELGLL 362          
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OAT_STACT1.185e-5957.21Ornithine aminotransferase OS=Staphylococcus carno... [more]
OAT_STAES1.548e-5954.88Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_STAEQ1.548e-5954.88Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_MOUSE7.682e-5952.29Ornithine aminotransferase, mitochondrial OS=Mus m... [more]
OAT_EXISA1.711e-5853.95Ornithine aminotransferase OS=Exiguobacterium sp. ... [more]
OAT_RAT8.494e-5851.38Ornithine aminotransferase, mitochondrial OS=Rattu... [more]
OAT_HUMAN8.494e-5851.83Ornithine aminotransferase, mitochondrial OS=Homo ... [more]
OAT_GEOSW1.109e-5755.35Ornithine aminotransferase OS=Geobacillus sp. (str... [more]
OAT_BACSU1.109e-5752.56Ornithine aminotransferase OS=Bacillus subtilis GN... [more]
OAT_MACCJ1.449e-5756.28Ornithine aminotransferase OS=Macrococcus caseolyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
back to top