DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA1_STAAC (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain COL) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVIRDE 462
            + V + D+ AL+  F++ G+ IAG + EP+ G  GV+ P +G+L+ +RD+ ++Y  L+I DE+ +G  R G   A  +  V PD+  LGK +GGG +PV A    KE+M  I P G      T  GNPLA      +L  +  E
Sbjct:  179 ITVPYNDLDALKIAFEKFGNDIAGVIVEPVAGNMGVVPPIEGFLQGLRDITTEYGALLIFDEVMTGF-RVGYHCAQGYFGVTPDLTCLGKVIGGG-LPVGAFGGKKEIMDHIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPE 320          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA1_STAA8 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVIRDE 462
            + V + D+ AL+  F++ G+ IAG + EP+ G  GV+ P +G+L+ +RD+ ++Y  L+I DE+ +G  R G   A  +  V PD+  LGK +GGG +PV A    KE+M  I P G      T  GNPLA      +L  +  E
Sbjct:  179 ITVPYNDLDALKIAFEKFGNDIAGVIVEPVAGNMGVVPPIEGFLQGLRDITTEYGALLIFDEVMTGF-RVGYHCAQGYFGVTPDLTCLGKVIGGG-LPVGAFGGKKEIMDHIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPE 320          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA1_STAA3 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVIRDE 462
            + V + D+ AL+  F++ G+ IAG + EP+ G  GV+ P +G+L+ +RD+ ++Y  L+I DE+ +G  R G   A  +  V PD+  LGK +GGG +PV A    KE+M  I P G      T  GNPLA      +L  +  E
Sbjct:  179 ITVPYNDLDALKIAFEKFGNDIAGVIVEPVAGNMGVVPPIEGFLQGLRDITTEYGALLIFDEVMTGF-RVGYHCAQGYFGVTPDLTCLGKVIGGG-LPVGAFGGKKEIMDHIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPE 320          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: ECTB_BACHD (Diaminobutyrate--2-oxoglutarate transaminase OS=Bacillus halodurans GN=ectB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   70 LEKIFKESGDQI---AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 591
            LE+  ++ G  +   A  + E +QGE G+      +L+ V  +C ++ IL+I D++Q+G+ R+G   + +   + PD+V L K++GG  +P++  L   E+ +   PGEH  TF GN  A   A  +L    D+   +        +   L K+  ++P    EV+G+G    +  D
Sbjct:  187 LERFLEDGGSGVEIPAAMILETVQGEGGINAARTEWLQRVEKICKRWGILLIIDDVQAGVGRTGTFFSFEDAGITPDIVCLSKSIGGFGLPLAITLFRPELDIW-APGEHNGTFRGNNHAFVTATEALSYWEDDSFEKDIQEKSATISDFLVKLVTEYPEIKGEVKGKGFMVGIASD 362          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: AT2L2_HUMAN (Alanine--glyoxylate aminotransferase 2-like 2 OS=Homo sapiens GN=AGXT2L2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.593e-18
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   85 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 594
            +E G +IA F  E +    G IIPP GY   V +   K   + +ADEIQ G  R G+         ++  PD+V +GK++G G  PV+ V A + V    +    E+ +TFGG+P++ AV +A L+V+  E+L + +  +G  L Q L + + + P  V +VRG GLF  V+  K
Sbjct:  201 QEKGRKIAAFFAESLPSVGGQIIPPAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGKDFVPDIVTMGKSIGNG-HPVACVAATQPVARAFEATGVEYFNTFGGSPVSCAVGLAVLNVLEKEQLQDHATSVGSFLMQLLGQQKIKHP-IVGDVRGVGLFIGVDLIK 373          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_TOLAT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=hemL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELR 504
            L   + D+ ++E  F   G +IA  + EP+ G    I P  G+L+ +R +C KY  L+I DE+ +G  R     A  +  + PD+  LGK +GGG +PV A    KE+M  I P        T  GNP+A A  +A L  I+     + LAE++  + E L+
Sbjct:  181 LTCTYNDLASVEATFASYGSEIACIIVEPVAGNMNCIPPVPGFLEGLRAICDKYGALLIIDEVMTGF-RVSLQGAQGYYGITPDLTTLGKIIGGG-MPVGAFGGKKEIMAYIAPTGPVYQAGTLSGNPVAMAAGLAMLKAIQQPGLYDTLAEKTRQVAEGLK 340          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_SYNP6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemL PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 60/199 (30.15%), Postives = 101/199 (50.75%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 621
            L   + D+ A++ +F E+  +IAG + EPI G +G I+P  G+L+ +R++  +++ L++ DE+ +G  +A  G     +   V PD+  LGK +GGG +PV A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L   L  I Q+  +     +  G+F    F  T  PV  Y+
Sbjct:  185 LTAPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGG---VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPATYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYE 376          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_SORC5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sorangium cellulosum (strain So ce56) GN=hemL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 62/163 (38.04%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELR 504
            L + + D  ALE  F   G  IA  + EP+ G  G + P  G+L  V DLC K+  L I DE+ +G  LAR G   A +   +RPD+  LGK +GGG +P++A     +VM  +    P     T  GNPLA    +A+LD +     E+L E  A L E LR
Sbjct:  191 LSLPYNDPAALEAAFAARGGDIAAVILEPVVGNMGCVPPEPGFLALVIDLCRKHGALSIFDEVMTGCRLARGG---AQERFGLRPDLTTLGKIVGGG-MPLAAYGGRADVMRVVSPLGPVYQAGTLSGNPLAVTAGLATLDRLTPALYERLEELGASLEEGLR 349          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_PROM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL1A) GN=hemL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 51/157 (32.48%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 501
            L   + D+ A++++F E+ D I+G + EP+ G AG I P  G+L+ +R++  +   L++ DE+ +G  R     A +   V PD+  +GK +GGG +PV A    KE+M  + P        T  GNPLA    I +L++++ E   E+   L ++L
Sbjct:  179 LTAPYNDLEAVKELFAENPDAISGVILEPVVGNAGFITPEPGFLEGLREVTQENGALLVFDEVMTGF-RISYGGAQERFGVTPDLTTMGKVIGGG-LPVGAYGGRKEIMSMVSPSGPMYQAGTLSGNPLAMTAGIKTLELLKQEGTYEKLEALTKKL 333          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_POLNS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Polynucleobacter necessarius (strain STIR1) GN=hemL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVAIASLDVIRDEKLAE 474
            L + + D+ A+E++F++ GDQIA  + EPI G   +I P   +L A+R L +K+  ++I DE+ +G  R     A   + + PD+  LGK +GGG +P++A    KE+M  + P        T  GNP+A A  + +L+++  E   E
Sbjct:  185 LVLPYNDVAAIEEVFQKQGDQIAAVIIEPIAGNMNLIQPSKAFLAAIRTLTAKHGAVLIYDEVMTGF-RVALGGAQSLQGITPDLTCLGKVMGGG-MPMAAFGGKKEIMSKLAPLGNVYQAGTLSGNPVAVAAGLKTLEIVSREGFYE 330          
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAAC8.593e-1837.50Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA88.593e-1837.50Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA38.593e-1837.50Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
ECTB_BACHD8.593e-1828.25Diaminobutyrate--2-oxoglutarate transaminase OS=Ba... [more]
AT2L2_HUMAN8.593e-1835.43Alanine--glyoxylate aminotransferase 2-like 2 OS=H... [more]
GSA_TOLAT1.122e-1733.95Glutamate-1-semialdehyde 2,1-aminomutase OS=Tolumo... [more]
GSA_SYNP61.122e-1730.15Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SORC51.122e-1738.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Sorang... [more]
GSA_PROM11.122e-1732.48Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_POLNS1.122e-1733.78Glutamate-1-semialdehyde 2,1-aminomutase OS=Polynu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
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