DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_VIBVU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio vulnificus GN=hemL PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 57/181 (31.49%), Postives = 91/181 (50.28%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 561
            L   F D+ ++ ++F  +  +IA  + EP+ G    I P +G+ + +R++C +   L+I DE+ +G  R     A     ++PD+  LGK +GGG +PV A    KEVM  I P        T  GNP+A A   A L ++R+E    +LA ++ HL +  +      Q   P  V +V G
Sbjct:  177 LTATFNDLDSVRELFAANKGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVMTGF-RVALGGAQAHYNIKPDLTTLGKVIGGG-MPVGAFGGRKEVMQYIAPTGPVYQAGTLSGNPVAMAAGYACLTLLREEGNEKRLASKTKHLADGFKS--LAAQHGIPLVVNQVGG 353          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_THEAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosipho africanus (strain TCF52B) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 63/218 (28.90%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   52 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVI-RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMK------ERGILA*PTP 669
            + DI +++++F + G+ IA  + EP+ G  GV++P  G+L+ +R++  +Y  L+I DE+ +G  R     A  +  V PD+  LGK +GGG +PV A    KE+M  I P        T  GNPL  A  I ++ +I  D     +   LG+   + +      F   +  ++      F+  E D     +++ D+ +  K      E GIL  P+P
Sbjct:  175 YNDIESVKELFDKYGENIACVIVEPVAGNMGVVLPKQGFLEGLREITKEYGSLLIFDEVITGF-RVSINGAQGYYNVFPDITTLGKIIGGG-LPVGAYGGRKEIMELISPQGPVYQAGTLSGNPLTLAAGIKTIKIIENDPDFYSKLDELGKYFEEGIVSALGDFDVKINRIKSMLSFFFSKQEVDSYEKVINS-DVEIYKKLFKCLFENGILLPPSP 389          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_SYNS3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9311) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 507
            L   + D+ +++++F E+ D IAG + EPI G AG I P  G+L+ +R+L  +   L++ DE+ +G  R     A     V PD+  +GK +GGG +PV A    KE+M  + P        T  GNPLA    I +L++++     E+     E L Q
Sbjct:  189 LTAPYNDLESVKQLFAENPDAIAGVILEPIVGNAGFIQPEPGFLEGLRELTKENGALLVFDEVMTGF-RISYGGAQAHFGVTPDLTTMGKVIGGG-LPVGAYGGRKEIMEMVAPAGPMYQAGTLSGNPLAMTAGIKTLELLKQPGSYEKLTATTERLIQ 345          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_METAC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methanosarcina acetivorans GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 504
            L+  + DI  +  + +++ D +A  + EP+ G  G I+P  GYLK +R L  + ++L+I DE+ +G  LA  G   A ++  V PDM  LGK +GGG +P+      +E+M  I P        TF G+P + A  IA LD ++ E +  +    G+ +R
Sbjct:  180 LQAPYNDIETMTTLVEKNRDDLAAVIIEPVLGNIGPILPLPGYLKELRKLTKENDVLLIFDEVITGFRLAMGG---AQEYFGVVPDMTTLGKIVGGG-LPIGVFGGRREIMEMIAPSGAVYQAGTFSGSPCSVAAGIAVLDYLKKEDIHAKLNSTGDYMR 335          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_GEOLS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGE 495
            L  ++  + +++ +  E+  QIA  + EP+ G  G + P  G+L+ +R+LC+   I++I DE+ SG  R     A     V PDM  LGK +GGG +PV A    +E+M  + P        T  GNPLA    I +L  ++     ++L E+S+ L E
Sbjct:  179 LTAEYNSLASVKTLITENSGQIACIILEPVAGNMGTVPPRPGFLEGLRELCTNEGIILIFDEVMSGF-RVAYGGAQSLYGVTPDMTTLGKIIGGG-LPVGAFGGKREIMEKLSPSGGVYQAGTLSGNPLAMTAGIETLKFLQQPGFYDRLEEKSSQLSE 335          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_EDWI9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Edwardsiella ictaluri (strain 93-146) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 58/184 (31.52%), Postives = 91/184 (49.46%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI--QQQFPNYVKEVRGR-GLF 573
            L   + D+ ++   F     +IA  + EP+ G    I P  G+L+ +R+LC +Y  L+I DE+ +G  R     A ++ +V PD+  LGK +GGG +PV A    +EVM  + P        T  GNP+A A   A L+ I    +  + A L + L + L     +++ P  V  V G  G+F
Sbjct:  177 LTCSYNDLDSVRAAFARYPQEIACIIVEPVAGNMNCIPPQPGFLQGLRELCDQYGALLIIDEVMTGF-RVALGGAQEYYDVTPDLTCLGKIIGGG-MPVGAFGGRREVMEALAPTGPIYQAGTLSGNPVAMAAGYACLNEINQPGIYPQLAELTDNLAEGLLAAAREEKIPLVVNHVGGMFGIF 358          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_DESVH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 516
            L   + D+ A++ +F   G  IA  + E + G  G++ P  G+L+ +R+LC ++  L+I DE+ +G  R     A     + PD+  LGK +GGG +PV A    +E+M  I P GE     T  GNPLA A  IA+LDV+       RS + G E R   F
Sbjct:  178 LLAPYNDLAAVKDLFALHGKDIAAIIVEAVAGNMGLVPPKAGFLEGLRELCDQHGALLIFDEVITGF-RVSFGGAQQRFGITPDLTTLGKIIGGG-LPVGAYGGKREIMQRIAPCGEVYQAGTLSGNPLAMAAGIATLDVL------SRSDYAGLEARVAAF 331          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_BORPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella parapertussis GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 54/173 (31.21%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   13 GFGPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQ 507
            G  P    H L ++F ++ A++  F + G +IA  + EP+ G   +I P +G+L  +R+LC+++  ++I DE+ +G  R G         VRPD+  L K +GGG +PV A     ++M  I P        T  GNP+A A  +A++ +I +    E+L+ ++A L + L++
Sbjct:  167 GVPPEFVAHTLPLEFNNLAAVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAGLRELCTRHGAVLIFDEVMTGF-RVGPQGVQGLTGVRPDLTTLAKVIGGG-MPVGAFGGRADLMAHITPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGFYERLSAQTARLAQGLQE 337          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_BORBR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella bronchiseptica GN=hemL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 54/173 (31.21%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   13 GFGPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQ 507
            G  P    H L ++F ++ A++  F + G +IA  + EP+ G   +I P +G+L  +R+LC+++  ++I DE+ +G  R G         VRPD+  L K +GGG +PV A     ++M  I P        T  GNP+A A  +A++ +I +    E+L+ ++A L + L++
Sbjct:  167 GVPPEFVAHTLTLEFNNLAAVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAGLRELCTRHGAVLIFDEVMTGF-RVGPQGVQGLTGVRPDLTTLAKVIGGG-MPVGAFGGRADLMAHIAPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGFYERLSAQTARLAQGLQE 337          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: GSA_ALTMD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=hemL PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKL 468
            L V+F ++ ++++IF+  GD IA  + EP+ G    I P +G+L+ +R +C +Y  ++I DE+ +G  R  R  A +   V+PD+  LGK +GGG +PV      ++++  I P        T  GNP+A A  +A+L  I+   L
Sbjct:  177 LTVEFNNLDSVKEIFETHGDDIACIIVEPVAGNMNCIPPVEGFLEGLRAICDQYGSVLIFDEVMTGF-RVSRGGAQERFNVKPDLTCLGKVIGGG-MPVGCFGGRRDIITHIAPTGPVYQAGTLSGNPVAMAAGLAALTQIKQPGL 320          
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_VIBVU1.241e-1631.49Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_THEAB1.241e-1628.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_SYNS31.241e-1633.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_METAC1.241e-1633.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Methan... [more]
GSA_GEOLS1.241e-1632.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_EDWI91.241e-1631.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Edward... [more]
GSA_DESVH1.241e-1635.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_BORPA1.241e-1631.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_BORBR1.241e-1631.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_ALTMD1.241e-1633.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Altero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
back to top