DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALPK (Putrescine aminotransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=patA PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 9.741e-46
Identity = 92/198 (46.46%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V E RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDSFRQLAREYPNLVHEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALPA (Putrescine aminotransferase OS=Salmonella paratyphi A GN=patA PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 9.741e-46
Identity = 92/198 (46.46%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V E RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDSFRQLAREYPNLVHEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_KLEP7 (Putrescine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=patA PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 9.741e-46
Identity = 96/218 (44.04%), Postives = 141/218 (64.68%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            F PLLPG   V FGDI A+  +    K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  L+I DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+  + L  ++A  G+ L      + Q++P+ V EVRG+G+  A+EF    +    YD   +M  + +L
Sbjct:  200 FMPLLPGFRHVPFGDINAMRTMLSECKKTGDDVAAVILEPIQGEGGVILPPTGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNEI---GYDFASEMFRQRVL 414
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALTI (Putrescine aminotransferase OS=Salmonella typhi GN=patA PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.272e-45
Identity = 92/198 (46.46%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V E RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALHS (Putrescine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=patA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.272e-45
Identity = 92/198 (46.46%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V E RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ENTS8 (Putrescine aminotransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=patA PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.662e-45
Identity = 92/196 (46.94%), Postives = 134/196 (68.37%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I AL ++    K++GD +A  + EPIQGE GVI+PP GYL AVR LC +Y  L+I DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A++ V+ +E L  ++   G+ L     ++ +++P+ V+E RGRG+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIDALRELLGECKKTGDDVAAVILEPIQGEGGVILPPSGYLPAVRKLCDEYGALLIFDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLACAAALATIHVLLEENLPAQAEQKGDMLLDGFRQLAREYPHLVQEARGRGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALTY (Putrescine aminotransferase OS=Salmonella typhimurium GN=patA PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALSV (Putrescine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=patA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALPC (Putrescine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=patA PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALPB (Putrescine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=patA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAT_SALPK9.741e-4646.46Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPA9.741e-4646.46Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_KLEP79.741e-4644.04Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
PAT_SALTI1.272e-4546.46Putrescine aminotransferase OS=Salmonella typhi GN... [more]
PAT_SALHS1.272e-4546.46Putrescine aminotransferase OS=Salmonella heidelbe... [more]
PAT_ENTS81.662e-4546.94Putrescine aminotransferase OS=Enterobacter sakaza... [more]
PAT_SALTY2.834e-4545.96Putrescine aminotransferase OS=Salmonella typhimur... [more]
PAT_SALSV2.834e-4545.96Putrescine aminotransferase OS=Salmonella schwarze... [more]
PAT_SALPC2.834e-4545.96Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPB2.834e-4545.96Putrescine aminotransferase OS=Salmonella paratyph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
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