DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SHIBS (Putrescine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOUT (Putrescine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOLU (Putrescine aminotransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOLI (Putrescine aminotransferase OS=Escherichia coli (strain K12) GN=patA PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOLC (Putrescine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOL5 (Putrescine aminotransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOK1 (Putrescine aminotransferase OS=Escherichia coli O1:K1 / APEC GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOHS (Putrescine aminotransferase OS=Escherichia coli O9:H4 (strain HS) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAT_SHIBS3.134e-4445.41Putrescine aminotransferase OS=Shigella boydii ser... [more]
PAT_ECOUT3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSM3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSE3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLU3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECOLI3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLC3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOL53.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_ECOK13.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECOHS3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O9... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
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