DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECODH (Putrescine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOBW (Putrescine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=patA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO8A (Putrescine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO81 (Putrescine aminotransferase OS=Escherichia coli O81 (strain ED1a) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO5E (Putrescine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=patA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO57 (Putrescine aminotransferase OS=Escherichia coli O157:H7 GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO55 (Putrescine aminotransferase OS=Escherichia coli (strain 55989 / EAEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO45 (Putrescine aminotransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO27 (Putrescine aminotransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=patA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO24 (Putrescine aminotransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=patA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAT_ECODH3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOBW3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO8A3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO813.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO5E3.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO573.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO553.134e-4445.41Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO453.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O4... [more]
PAT_ECO273.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO243.134e-4445.41Putrescine aminotransferase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
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