DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:248..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 5.345e-44
Identity = 89/196 (45.41%), Postives = 132/196 (67.35%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGHIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECOL6 (Putrescine aminotransferase OS=Escherichia coli O6 GN=patA PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMLTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ECO7I (Putrescine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 88/196 (44.90%), Postives = 132/196 (67.35%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPL  A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLTCAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ENT38 (Putrescine aminotransferase OS=Enterobacter sp. (strain 638) GN=patA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.191e-43
Identity = 87/196 (44.39%), Postives = 134/196 (68.37%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FGDI A+  +  E   +GD +A  + EPIQGE GVI+PP GYL AVR LC +++ L+I DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPL+ A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V++ RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGDINAMRTMLTECRKTGDDVAAVILEPIQGEGGVILPPLGYLPAVRKLCDEFDALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLSCAAALATINVLLEQNLPAQAEQKGDMLLDGFLQLGREYPDLVQDARGKGMLIAIEF 395          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_ERWCT (Putrescine aminotransferase OS=Erwinia carotovora subsp. atroseptica GN=patA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.653e-43
Identity = 96/220 (43.64%), Postives = 140/220 (63.64%), Query Frame = 1
Query:   10 RGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            R F PLLPG   V FGDI+A+ K  ++   +GD +A  + EPIQGE GVI+PP+ YL AVR LC +   L+I DE+Q+G+ R+G+M A +   V+PD++ L KALGGGV+P+ A +A + V  +L   P  H +TFGGNPLA A A+A+++ +  + L E++A  GE L Q L ++  ++P  + E RG GL  A+EF K  +    Y    ++ +R IL
Sbjct:  198 RPFMPLLPGFHHVAFGDISAMRKQVQQCQKTGDDVAAIILEPIQGEGGVIVPPENYLPAVRALCDEVGALLILDEVQTGMGRTGKMFACEHYGVQPDILCLAKALGGGVMPIGATVATEAVFSVLFENPFLHTTTFGGNPLACAAALATVNELLTKNLPEQAAIQGEFLLQGLQQLAAEYPQLIIEARGMGLLQAIEFRKNEI---GYAFAKELFQRNIL 414          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.465e-43
Identity = 88/196 (44.90%), Postives = 132/196 (67.35%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F  LLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMQLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQADQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: ARGD_METKA (Acetylornithine aminotransferase OS=Methanopyrus kandleri GN=argD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.224e-41
Identity = 92/213 (43.19%), Postives = 131/213 (61.50%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            F PL+P    V +GD+ A+EK      D  A  + EP+QGEAGV IPP+G+L+ +R+LC ++ +L+I DE+QSG+ R+G+  A + E+V PD+V L K LGGGV PV A +A +EV    +PG+HGSTFGGNPLA A   A++  + +E L E +   G    +   +I  +  + V+EVRGRGL   VE         A D+  +M +RG L
Sbjct:  151 FEPLVPEFEHVPYGDVNAVEKAID---DDTAAVIVEPVQGEAGVRIPPEGFLRELRELCDEHGLLLIVDEVQSGMGRTGQFFAFEHEDVLPDIVCLAKGLGGGV-PVGATIAREEVAEAFEPGDHGSTFGGNPLACAAVCAAVSTVLEENLPEAAERKG----KLAMRILSEAEDVVEEVRGRGLMMGVEVGDDE---RAKDVAREMLDRGAL 352          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.779e-39
Identity = 86/192 (44.79%), Postives = 123/192 (64.06%), Query Frame = 1
Query:   16 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 591
            F PL  G   V +GDI A+       GD+ A  + EP+QGE GVIIPP+GYLK V++L  + ++L+I DE+Q+G  R+G M AS    V PD+  + KA+GGG  P+ AVLA++ V +  +PG+HGSTFGGNP   A AIA+++V+ DEKL ER+A +G      L ++     + V+++RG GL   +E D
Sbjct:  152 FRPLPEGFKHVPYGDIGAMADAV---GDETAAIILEPVQGEGGVIIPPEGYLKDVQELARQNDVLLILDEVQTGFGRTGAMFASQLFGVEPDITTVAKAMGGG-YPIGAVLANERVAMAFEPGDHGSTFGGNPWGCAAAIATIEVLMDEKLPERAAKMGSYFLGRLRQVLHGC-DAVRDIRGVGLMIGIEID 338          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.761e-39
Identity = 94/218 (43.12%), Postives = 131/218 (60.09%), Query Frame = 1
Query:   13 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV----IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 654
            GF PL PG   V F DI AL++      D+ A  + EP+QGE G+ +    YLKAVRDLC   NI++I DE+Q G+ R+GRM A +   V PD++ L KALGGGV P+ AV+  +E+   +  G+HG+TFGGNPLA + A+AS++V    I+D+K+ E+  +   +L   + K      N++KEVRG GL    E     L  +  DI  KM E+G L
Sbjct:  157 GFYPLPPGFKYVPFNDIEALKEAIT---DKTAAIMIEPVQGEGGIHVADKDYLKAVRDLCDDKNIVLIFDEVQCGMGRTGRMFAFEHYGVEPDILTLAKALGGGV-PIGAVVLKEEIAKALSYGDHGTTFGGNPLACSAALASVEVIEELIKDDKVIEKGKYFIRKLENLIEKY-----NFIKEVRGLGLMIGAE-----LEFNGADIVKKMLEKGFL 360          
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: OAT_VIGAC (Ornithine aminotransferase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.153e-38
Identity = 91/205 (44.39%), Postives = 127/205 (61.95%), Query Frame = 1
Query:   22 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 636
            P +PG   V + D  ALEK F++    +  ++ EPIQGEAGV+    GYL  VR+LC+KYN+L IADE+Q+GLAR+GRMLA D E+V+PD++ILGKAL GG+ PVSAVL D  +M CIQPG H +    +P    +A +   V    +  E +      LR+ L  + +   + V  VRG+GL NA+  +K      A+D+CL +
Sbjct:  198 PYMPGFEIVKYNDTAALEKAFQDPN--VCAYMVEPIQGEAGVVALDAGYLTEVRELCTKYNVLFIADEVQTGLARTGRMLAVDHEDVKPDLLILGKALSGGLYPVSAVLRDDHIMDCIQPGLHTAMDVMDPRMRILAASRYYVRVARERCENAQIQATYLRKELNTLPK---DVVPVVRGKGLLNAIVINK---KFDAWDVCLNL 394          
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAT_ESCF35.345e-4445.41Putrescine aminotransferase OS=Escherichia ferguso... [more]
PAT_ECOL66.981e-4445.41Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_ECO7I9.117e-4444.90Putrescine aminotransferase OS=Escherichia coli O7... [more]
PAT_ENT381.191e-4344.39Putrescine aminotransferase OS=Enterobacter sp. (s... [more]
PAT_ERWCT2.653e-4343.64Putrescine aminotransferase OS=Erwinia carotovora ... [more]
PAT_SHISS3.465e-4344.90Putrescine aminotransferase OS=Shigella sonnei (st... [more]
ARGD_METKA7.224e-4143.19Acetylornithine aminotransferase OS=Methanopyrus k... [more]
ARGD_METTH1.779e-3944.79Acetylornithine aminotransferase OS=Methanobacteri... [more]
ARGD_METJA6.761e-3943.12Acetylornithine aminotransferase OS=Methanocaldoco... [more]
OAT_VIGAC1.153e-3844.39Ornithine aminotransferase OS=Vigna aconitifolia P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
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