DY271440

Overview
NameDY271440
Unique NameDY271440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A + ALQ
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A + ALQ
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A + ALQ
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 93/173 (53.76%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFAL 724
            K V VGDGA GKTCLLI +    FP  YVPTVFDN+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  ++V ++ +S+    S ENV +KWI E+ ++  GVPIILVG K DLR+D Q    +   G  P+S AQ +E+   IGA  YIECS+KT   V+ VF+AA + +L
Sbjct:   13 KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLYFCQGVPIILVGCKADLRNDPQVIEQLRQQGQQPVSQAQAQEVADQIGAVEYIECSAKTGFGVREVFEAATRASL 185          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.046e-44
Identity = 88/178 (49.44%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGK+ L++SYT N +P+ Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI  A++
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPEPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIE 207          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 4.046e-44
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFAL 724
            K V VGDGA GKTCLLI ++   FP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVPIILVG K+DLR+D Q    +   G  P+++ +G+ +   IGA  Y ECS+KT   V+ VF+AA + +L
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 88/174 (50.57%), Postives = 120/174 (68.97%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+  +  +      P+    G  + + I A +Y+ECS+KT++ V+ VF+ A + ALQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOV_MOUSE (Rho-related GTP-binding protein RhoV OS=Mus musculus GN=Rhov PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI  A++
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIE 207          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOV_HUMAN (Rho-related GTP-binding protein RhoV OS=Homo sapiens GN=RHOV PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI  A++
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIE 207          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFA 721
            +K V VGDGAVGKT LLI YT+  FP DYVPTVFDNF+   + +   VNL LWDTAGQEDY+ LRPLSY   DVFI+ +S++ + S +N+  KW+PE+     G PIILVGTK DLR+DK+    +      P+S  +G  L K IGA  + ECS+ T   V  +F AAIK A
Sbjct:    9 VKVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFECSALTGNGVNDIFAAAIKAA 181          
The following BLAST results are available for this feature:
BLAST of DY271440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOB_MOUSE3.098e-4451.15Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]
RHOB_HUMAN3.098e-4451.15Rho-related GTP-binding protein RhoB OS=Homo sapie... [more]
RHOB_BOVIN3.098e-4451.15Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]
RHO1_ASHGO3.098e-4453.76GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHOV_RAT4.046e-4449.44Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHO1_YEAST4.046e-4452.02GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RHO_APLCA5.284e-4450.57Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHOV_MOUSE5.284e-4449.44Rho-related GTP-binding protein RhoV OS=Mus muscul... [more]
RHOV_HUMAN5.284e-4449.44Rho-related GTP-binding protein RhoV OS=Homo sapie... [more]
RACD_DICDI5.284e-4452.60Rho-related protein racD OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271440 ID=DY271440; Name=DY271440; organism=Citrus clementina; type=EST; length=918bp
CGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTATTTCCCGGCCG
AAACAAGCAGATGATGGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTC
CTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTTTCTCTGAGAGTTTAT
ATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAAAAAATGAGCGCAT
CAAGGTTTATTAAGTGCGTGACGGTAGGCGATGGAGCTGTGGGTAAAACT
TGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTACGGATTATGTGCC
AACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCACGG
TTAATCTTGGATTATGGGATACTGCTGGACAAGAGGATTATAACAGATTA
AGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCT
TATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGT
TGAAACATTATGCACCTGGTGTGCCAATAATTCTTGTTGGAACAAAGCTT
GATCTTCGGGATGATAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCC
CATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGTTGATTGGTGCACCTG
CTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTT
GATGCAGCCATCAAGTTTGCCCTCCAACCCCCAAAGACGAAAAAAAAAAA
GAATAAACCACAAAAGGCCGGCTCTATATTGTGATTGAAATTAGGTGTAA
AAAAATTATGAACCTCTGTCCTTTCTCAATTCCCCCCTCATCTTTCTTCC
TTTGGTCTGGAAAAAAATTCCATTTGACAAACTGGGGAGGATCCCCCCGG
GAAAACCTCAGGGGGTTT
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