DY304892

Overview
NameDY304892
Unique NameDY304892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:18..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.964e-64
Identity = 117/231 (50.65%), Postives = 148/231 (64.07%), Query Frame = 1
Query:  166 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ PKPS H+VIT  W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ P
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDP 233          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.566e-64
Identity = 117/226 (51.77%), Postives = 151/226 (66.81%), Query Frame = 1
Query:  166 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWN-DAVRNRIGFFSTFCGKFGI 840
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++F++AIWFWMTAQ PKPSCH+VIT++W PS +D  +GRLPGYG+ TNIINGG ECG+G++ D  ++R+G++  +C  F +
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLV--SSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRV 239          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 4.096e-62
Identity = 115/231 (49.78%), Postives = 143/231 (61.90%), Query Frame = 1
Query:  148 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGI 840
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNV 236          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 2.033e-61
Identity = 114/231 (49.35%), Postives = 140/231 (60.61%), Query Frame = 1
Query:  148 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGI 840
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q  KPSCH VI  +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNV 236          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.457e-59
Identity = 117/233 (50.21%), Postives = 146/233 (62.66%), Query Frame = 1
Query:  148 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A G  +A GYCF+ E +               +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +W PSA D  A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + P
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMG----------SGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAP 232          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 2.485e-59
Identity = 120/244 (49.18%), Postives = 139/244 (56.97%), Query Frame = 1
Query:  109 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFG 837
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q PKPSCH VIT+ W PSA D  AGR+PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLG 277          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 4.239e-59
Identity = 122/249 (49.00%), Postives = 150/249 (60.24%), Query Frame = 1
Query:  106 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFG 837
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ  KPSCH+VI   W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLV--STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG 244          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 6.121e-58
Identity = 113/227 (49.78%), Postives = 140/227 (61.67%), Query Frame = 1
Query:  166 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + P
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAP 238          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.967e-57
Identity = 104/238 (43.70%), Postives = 144/238 (60.50%), Query Frame = 1
Query:  142 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGI 840
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC +  +  V NRIGF+  +C   G+
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGV 276          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.358e-56
Identity = 114/222 (51.35%), Postives = 138/222 (62.16%), Query Frame = 1
Query:  148 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFF 813
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E +               YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q  KPSCH+VIT  W PSA D  A R+PGYG+ TNIINGGIECG+G N  V +RIG++
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMG----------NGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYY 228          
The following BLAST results are available for this feature:
BLAST of DY304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHID_SOLLC1.964e-6450.65Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ2.566e-6451.77Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI4.096e-6249.78Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC2.033e-6149.35Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC1.457e-5950.21Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_POPTR2.485e-5949.18Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ4.239e-5949.00Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC6.121e-5849.78Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ3.967e-5743.70Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY3.358e-5651.35Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB11RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304892 ID=DY304892; Name=DY304892; organism=Citrus clementina; type=EST; length=1067bp
GGGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGCGTC
CTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCAC
GGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTAC
TGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAAT
TCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGC
TAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAA
GCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATG
ACGTANACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATC
AACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCG
TATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCGCCCTGTTA
CAATCTTGATTGCTACCACAACAGCCTTTTGGGCTTATTCTGATGGCACG
ATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAA
GCTACTTAATAAAAACTTTAGATGTCACACTTTGTAGTTGGGACAATAAG
TGGTTACGCTTCTTATGTAAATAAATTAAATAAAACTGATCCCAACTGGA
ATTAATGGATTCTTCTC
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