DY304906

Overview
NameDY304906
Unique NameDY304906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304906 vs. ExPASy Swiss-Prot
Match: AT1A3_OREMO (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Oreochromis mossambicus GN=atp1a3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.809e-15
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 3 
Query:  234 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 653
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +       + +  + L  + +L ++L  D   A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  714 KADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLFFIIVNIPLALGTITILCIDLGTDMGSAISLAYETAESDIMKRQP---RNPCRDKLVNERLISIAYGQIGMIQAL 850
[Close]
BLAST of DY304906 vs. ExPASy Swiss-Prot
Match: AT1A_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.317e-14
Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 3 
Query:  234 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 644
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ NI+K I + LT  +  L    +  +    + +  V +L ++L  D + A+++A E P     +  P   R+P+   ++   L+  A  Q+ V+
Sbjct:  702 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNIKKSIAYTLTSKIPELSPFLMYILFDLPLAIGTVTILCIDLGTDVVPAISMAYEGP-----EADPRKPRDPVKEKLVNERLISMAYGQIGVM 833
The following BLAST results are available for this feature:
BLAST of DY304906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A3_OREMO4.809e-1533.57Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_ARTSF5.317e-1433.58Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AF11RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304906 ID=DY304906; Name=DY304906; organism=Citrus clementina; type=EST; length=1281bp
GGATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGAT
TCTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTG
TTTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTA
TTGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATA
TTATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCT
GGCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTA
TTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGT
CGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGT
CAATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTG
ATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGAT
ACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGAT
GCAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGT
GGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTC
CTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGC
CCATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTT
GCCAGGTTAGTAAATTATCANGGGATACAATAATTTGTTAAGTTGAGCTT
CTGTTTTGTGTAATTTTCGAGGGCAGCTTGATGCTGCTAGCATTGTCACT
GCTAGAAATGTTTTTTTTACGGGCATTTGTTGGGTTTGTACTGTCATAAA
ATTTGGATGGGCTGACAAACAGGTTAATTGTTTGAAAATGCAAATCTTTA
ATGGAATTTAATTGTTCCGAAAACCTGATGAAAAAAATTATTTTTTGGAA
GGATTTACTAAAAAACCTCCTTTTTTATTGGGGGATGAGGGGCAGTAAAA
CCTTGGTACCTTCCAATACATTTTCATTTCCTTTTTTTTTGGGGAAAAAG
GGTATTCCAACTACCACGCCATTTATTTGGGAAACCAAGGGAAAAATTTT
TTTCCCCCCCCTCTTTTCTCCCTTTACTCTACTTTTGGCCCCCCCCCCCT
CCTTTTTCCGTGGGGGGAGAAAGTGTTAAAAAACACTCCGTTCGCCGCCC
CCCCCACCCCCCCCCCCCTCCCCCTTTTCTT
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