DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 2.902e-65
Identity = 126/178 (70.79%), Postives = 154/178 (86.52%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL+  NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMS 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 2.457e-64
Identity = 130/217 (59.91%), Postives = 167/217 (76.96%), Query Frame = 2 
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE----PAPSTSQNDRLS*YDGHQKQHIRPCCS 754
            M  R++ EY  LF++VLIGDSGVGKSN+LSRFTR  F L+SKS IG  F+T + Q+EG+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  +F+NV RWL+ELRDHADS IVIMM+GNK+DL HLRAV+  +  + AE+EGL F+ETSA+EA+NVE AFQTI++E+Y I+++K+L++ E     AP  SQ   +S  D       R CCS
Sbjct:    1 MGGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTIS-IDSAAGNTKRACCS 216
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 126/211 (59.72%), Postives = 164/211 (77.73%), Query Frame = 2 
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPS-TSQNDRLS*YDGHQKQHIRPCCS 754
            R E++YD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+ +KAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ +TFENV RWLKELRDH D  IV+M++GNK+DL+HL AV T +  ++AERE L F+ETSALE+ NVENAF  +L++IYRI+SK+S+ + + A S   + ++++  D         CCS
Sbjct:    6 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINIKDDVSAVKKGGCCS 216
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 122/178 (68.54%), Postives = 153/178 (85.96%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+  LSF+ETSAL++ NVE AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 122/178 (68.54%), Postives = 153/178 (85.96%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+  LSF+ETSAL++ NVE AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182
[Close]
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 122/178 (68.54%), Postives = 153/178 (85.96%), Query Frame = 2 
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+  LSF+ETSAL++ NVE AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_MOUSE1.303e-6570.79Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.303e-6570.79Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.303e-6570.79Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA1.303e-6570.79Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN2.902e-6570.79Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RGP2_ORYSJ2.457e-6459.91Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RIC2_ORYSJ9.337e-6459.72Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11B_RAT9.337e-6468.54Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE9.337e-6468.54Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN9.337e-6468.54Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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