DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 122/178 (68.54%), Postives = 153/178 (85.96%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHAD+ IVIM++GNK+DL+HLRAV T +A ++AE+  LSF+ETSAL++ NVE AF+ IL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIS 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 9.337e-64
Identity = 122/178 (68.54%), Postives = 153/178 (85.96%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+  LSF+ETSAL++ NVE AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.300e-62
Identity = 120/183 (65.57%), Postives = 152/183 (83.06%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE 673
            R+E++YD LF+VVLIGDSGVGKSNLLSRFT+ +F LESKS IG  F+T T +V+G+ +KAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  TFENV RWLKEL++H D  IV+M++GNK+DL+HL AV T+D  SYAE+E L F+ETSALEA NVE+AF  +L++IYRI SKK + + E
Sbjct:    5 RVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGE 187          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 3.004e-62
Identity = 120/188 (63.83%), Postives = 153/188 (81.38%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPST 688
            R ++EYD LF++VLIGDSGVGKSNLLSRFT+ +F LESKS IG  F+T T  V+ + +KAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  TFEN +RWLKELRDH D  IV+M+IGNK+DL+HL AV T+D  S+AERE L F+ETSALEA NVENAF  +L++IYRI+SK+++ + +   S+
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSS 192          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 5.123e-62
Identity = 120/189 (63.49%), Postives = 155/189 (82.01%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS 691
            + ++EYD LF++VLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T +  ++G+ IKAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ TTFE   RWLKELRDH D  IV+M+IGNK+DL+HL  V+T+D  ++AE+E L F+ETSALEA NVENAF  +L++IYRI+SK+++ + +  PSTS
Sbjct:    5 KADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGD-RPSTS 192          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.141e-61
Identity = 120/189 (63.49%), Postives = 154/189 (81.48%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS 691
            R ++EYD LF++VLIGDSGVGKSNLLSRFT+ +F LESKS IG  F+T +  ++ + IKAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  T+ENV+RWLKELRDH D  IV+M+IGNK+DL+HL AV+T +A   AEREGL F+ETSALEA NVENAF   L++IYRI+SKK++ + +   ++S
Sbjct:    5 RADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSS 193          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.321e-61
Identity = 115/179 (64.25%), Postives = 151/179 (84.36%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSL 661
            R E++YD LF++VLIGDSGVGKSNLLSRF+R +F LESKS IG  F+T + +V+ + +KAQIW+TA QE+Y AIT+AYYRGA GAL++YD+T+  TFENV RWLKELRDH D  IVIM++GNK DL+HLRAV+T+DA ++AERE   F+ETSALE++NVENAF  +L+EIY+++ +K+L
Sbjct:    6 RAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKAL 184          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.664e-61
Identity = 121/195 (62.05%), Postives = 158/195 (81.03%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSL-SSWEPAPSTSQNDRL 706
            R ++EYD LF+VVLIGDSGVGKSNLLSRFT+ +F LESKS IG  F+T +  V+ + IKAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ +TFENV  WLKELR+H D  IV+M++GNK+DL+HL AV T+DA S+AE+E L F+ETSALEA NVENAF  +L++I+ I+SKK++ ++ E A   S+ D++
Sbjct:    5 RADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKI 199          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.398e-61
Identity = 121/211 (57.35%), Postives = 161/211 (76.30%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE----PAPSTSQNDRLS*YDGHQKQHIRPCC 751
            E+EYD LF+ VLIGDSGVGKSNLL RFTR +F +ESKS IG  F+T    ++ + IKAQIW+TA QE+Y AIT+AYYRGA GAL++YD+TK ++F+NV RWLKELR+HADS IVIM++GNKTDL HLRAV+T++A ++A    LSF+ETSA++A NVE AFQT+L+EI+RI+S +SL + +    P    + N   +  D ++K+    CC
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQCC 214          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.398e-61
Identity = 117/179 (65.36%), Postives = 150/179 (83.80%), Query Frame = 2
Query:  125 RLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSL 661
            R +EEYD LF++VLIGDSGVGKSNLLSRFT+ +F LESKS IG  F+T T +VEG+ +KAQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  TFEN +RWL+ELR H D  IV+M+IGNK DL+HL AV T++A ++AERE L F+ETSAL+A NVENAF  +L++I++I+SK+S+
Sbjct:    5 RADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSV 183          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DISOM9.337e-6468.54Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN9.337e-6468.54Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH2.300e-6265.57Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11D_LOTJA3.004e-6263.83Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA5.123e-6263.49Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPT3_NICPL1.141e-6163.49Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_TOBAC3.321e-6164.25Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH5.664e-6162.05Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_SCHPO7.398e-6157.35GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1A_ARATH7.398e-6165.36Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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