DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 4.962e-57
Identity = 113/191 (59.16%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  134 EEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQNDRL 706
            ++ D +F+VVLIGDS VGKS LL+RF R +F L+SK+ IG  F T T  ++ RT+KAQIW+TA QE+Y A+T+AYYRGA GA+L+YD+TK  +F++V+RWL+ELR HAD  IVIM+IGNK+DL  LR V T+DA  +AERE L F+ETSALE+ NVENAF T+L+EIYRI+SKK+L + E   S+  +  L
Sbjct:   13 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLL 203          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.105e-56
Identity = 116/210 (55.24%), Postives = 157/210 (74.76%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQNDRLS*YDGHQKQHIRPCCSHP 760
            +EEYD L+++VLIGDSGVGKSNLLSRFTR +F LE+KS IG  F+T T Q EG+TIKAQ+W+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+++V RW+ ELR++AD  I IM++GNK+DL+HLR V+T +A  ++E+  L+F+ETSAL++ NVE AFQ IL++IY I+S+ S S+    P T+        D + +  I P  S P
Sbjct:    7 QEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHST---GPQTT-------IDSNTETIILPTTSEP 206          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.765e-54
Identity = 107/177 (60.45%), Postives = 143/177 (80.79%), Query Frame = 2
Query:  143 D*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE 673
            D +F+VVLIGDS VGKS +L+RF R +F L+SKS IG  F T T  ++ +T+KAQIW+TA QE+Y A+T+AYYRGA GA+L+YD+TK  TF+++ RWL+ELR+HAD  IVI++IGNK DL + R V T+DA  +AE+EGL F+ETSALEA NVE+AF T+L+EIY I++KKSL++ E
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADE 191          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.494e-53
Identity = 102/178 (57.30%), Postives = 145/178 (81.46%), Query Frame = 2
Query:  134 EEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            ++ D +F+VVLIGDS VGKS +L+RF R +F L+SK+ IG  F T T  ++ +++KAQIW+TA QE+Y A+T+AYYRGA GA+L+YD+TK  TF+++ RWL+ELR HAD  IVIM+IGNKTDL+  RAV T+DA  +A++EGL F+ETSA+EA N+E+AF T+L+EI+ I++KK+L++
Sbjct:   10 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAA 187          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 6.277e-52
Identity = 100/180 (55.56%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  134 EEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE 673
            ++ D +F+VVLIGDS VGK+ +L+RF R +F L+SK+ IG  F T T  ++ +++KAQIW+TA QE+Y A+T+AYYRGA GA+L+YD+TK  TF+++ RWL+ELR HAD  IVIM+ GNKTDL+  RAV T+DA  +A++EGL F+ETSA+EA  +E+AF T+L+EI+ I++KK+L++ E
Sbjct:   10 QKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADE 189          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 6.940e-51
Identity = 108/212 (50.94%), Postives = 149/212 (70.28%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQNDRLS*YDGHQKQHIRPCC 751
            M  R +E+Y+ +F+VVLIG+SGVGK+NLLSRFTR +F  +S++ IG  FST T  +    +KAQIW+TA  E+Y AIT+AYYRGA GALL++D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V T++A  +AE  GL F+ETSAL++ NVE AFQT+L EI+  +SK+  +S   +  T  N +     G  ++  R CC
Sbjct:    1 MGNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQAGQDPGPGEK--RACC 210          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 1.546e-50
Identity = 96/187 (51.34%), Postives = 144/187 (77.01%), Query Frame = 2
Query:  137 EYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQN 697
            +YD LF++VLIGDSGVGKSNLLSRFT+ +F ++SKS IG  F+T T +++G+ IKAQIW+TA QE+Y AIT+AYYRGA GAL++YD++K +++EN + WL ELR++AD  + + +IGNK+DL HLRAV T+++ ++A+   L F ETSAL + NV+ AF+ +++ IY+ +SK  +   + + + + N
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNAN 195          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 7.674e-50
Identity = 102/180 (56.67%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKK 655
            M  R EE+Y+ +F+VVLIG+SGVGK+NLLSRFTR +F  +S++ IG  FST T  +    IKAQIW+TA  E+Y AIT+AYYRGA GALL++D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V T++A  +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+
Sbjct:    1 MGNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.709e-49
Identity = 95/178 (53.37%), Postives = 139/178 (78.09%), Query Frame = 2
Query:  134 EEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            EEY  LF++V+IGDS VGKSNLLSR+ R +F   SK+ IG  F T + ++EG+ +KAQIW+TA QE++ A+T+AYYRGA GAL++YD+T+ TTFE+V RWL EL+ H+D+ +  M++GNK DL+++RAV+ ++  + AE EGL FVETSAL++ NV+ AF+ ++ +IY  +S+K L+S
Sbjct:    9 EEY--LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS 184          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.916e-49
Identity = 101/184 (54.89%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            M    EE+Y+ +F+VVLIG+SGVGK+NLLSRFTR +F  +S++ IG  FST T  +    +KAQIW+TA  E+Y AIT+AYYRGA GALL++D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V T++A  +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S
Sbjct:    1 MGNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNS 184          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ4.962e-5759.16Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI1.105e-5655.24Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_LOTJA1.765e-5460.45Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC1.494e-5357.30Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC6.277e-5255.56Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB25_MOUSE6.940e-5150.94Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
YPT31_YEAST1.546e-5051.34GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RAB25_BOVIN7.674e-5056.67Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA1_ARATH1.709e-4953.37Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB25_HUMAN2.916e-4954.89Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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