DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.484e-49
Identity = 101/184 (54.89%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            M    EE+Y+ +F+VVLIG+SGVGK+NLLSRFTR +F  +S++ IG  FST T  +    +KAQIW+TA  E+Y AIT+AYYRGA GALL++D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V T++A  +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S
Sbjct:    1 MGNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS 184          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 1.108e-48
Identity = 96/172 (55.81%), Postives = 134/172 (77.91%), Query Frame = 2
Query:  137 EYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            +YD LF++VLIGDSGVGKSNLLSRFT  +F +ESKS IG  F+T T +VE + IKAQIW+TA QE+Y AIT+AYYRGA GAL++YD++K +++EN + WL ELR++AD  + + +IGNK+DL HLRAV T +A ++A    + F ETSAL + NV+ AF+ ++  I++++SK
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 180          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.890e-48
Identity = 96/178 (53.93%), Postives = 136/178 (76.40%), Query Frame = 2
Query:  134 EEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            EEY  LF++V+IGDS VGKSNLL+R+ R +F   SK+ IG  F T +  ++G+ +KAQIW+TA QE++ A+T+AYYRGA GAL++YD+T+ +TFENV RWL EL  H+D+ +  M+IGNK DL+ +RAV+ ++  S AE EGL F+ETSAL++ NV+ AF+ ++ EIY  IS+K L+S
Sbjct:    9 EEY--LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS 184          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.147e-45
Identity = 88/175 (50.29%), Postives = 134/175 (76.57%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKK 655
            EEE + LF++V+IGDS VGKSNLL+RFTR +F  ++K+ IG  F T + +++ +TI AQ W+TA QE++ A+T+ YYRGA GA+++YD+T   +F+NV+RWL ELR+ A+  I+IMM+GNK+DL+  R V T++A ++AE   +SF+ETSAL + NV  +F+ +L++IY ++S K
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.604e-39
Identity = 80/172 (46.51%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  137 EYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            EYD L ++V+IGDSGVGKSNLLSR+ + +F +   S IG  FST T +++ + IK Q+W+TA QE+Y +IT +YY+GA GAL++Y++    +F N+ +WLK+ R++A     IM++GNK+DLK  R V+T +   +AE+  + F+ETSAL++ NVE AF  + + IY  + K
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFK 178          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.730e-37
Identity = 81/169 (47.93%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRII 646
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA+  + IM+IGNK DL H RAV T++   +A+  GL F+ETSA  A NVE AF     EIY+ I
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.730e-37
Identity = 81/169 (47.93%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRII 646
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA+  + IM+IGNK DL H RAV T++   +A+  GL F+ETSA  A NVE AF     EIY+ I
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.307e-36
Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H+ S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIYR I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.076e-35
Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSL------SSWEPAPSTSQNDRLS 709
            Y  +F+ ++IGD GVGKS LL +FT  KF  +    IG  F T   +V G+ IK QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  ++A  +AE  GL F+E SA    NVE+AF     +IY+ I   SL      S  +  PS  Q  RL+
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLT 203          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.076e-35
Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSL------SSWEPAPSTSQNDRLS 709
            Y  +F+ ++IGD GVGKS LL +FT  KF  +    IG  F T   +V G+ IK QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  ++A  +AE  GL F+E SA    NVE+AF     +IY+ I   SL      S  +  PS  Q  RL+
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLT 203          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_RABIT8.484e-4954.89Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
YPT32_YEAST1.108e-4855.81GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
ARA4_ARATH1.890e-4853.93Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI1.147e-4550.29Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.604e-3946.51Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA9.730e-3747.93GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE9.730e-3747.93GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_HUMAN6.307e-3646.78Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB14_RAT1.076e-3542.86Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.076e-3542.86Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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