DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 49/171 (28.65%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQ--VEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHAD-SYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKK 655
            +++V++GD GVGKS +  +F +  F  E    I     +  +Q  ++       I +TA QE+Y A+   + R   G +L+Y +T   TFE V +  +++    D  +  ++++GNK DL+  R V T      A++    F E SA + + +++AF  ++ EI R   +K
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIE---DSYRKQCLIDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRRSQQEK 179          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 45/154 (29.22%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAF 613
            F++VL+GD G GK+  + R    +F  +  + IG     L        IK  +W+TA QE++  + + YY  A+  ++++DVT   T++NV  W ++L    ++ I I++ GNK D+K  +  A    +++  ++ L + + SA    N E  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 58/175 (33.14%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQV--EGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIM-MIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSS 667
            +++V++G  GVGKS L  +  +  F  E    I     +  +QV  +G T    I +TA QE+Y A+ + Y R   G L ++ +    +F +++ + ++++   DS  V M ++GNK DL   R V T+ A   A+  G+ F+ETSA     VE+AF T++ EI +   KK  SS
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRLKKLNSS 174          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 51/171 (29.82%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLK-ELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALE-AINVENAFQTILSEIYRIISKKS 658
            +++V++GD GVGKS L  +F +  F  +    I   +   T +++ +     + +TA QE++ A+   Y R   G L++Y VT   +FE+V R+ +  LR        ++++ NK DL HLR +  +     A +  + ++ETSA +  +NV+ AF  ++  I + I +KS
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQIPEKS 183          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQV--EGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKS 658
            +++V++G  GVGKS L  +  +  F  E    I     +  +QV  +G T    I +TA QE+Y A+ + Y R   G L ++ +    +FE++  + ++++   DS  + ++++GNK DL   R V T+ A   A   G+ F+ETSA     V++AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 53/192 (27.60%), Postives = 103/192 (53.65%), Query Frame = 2
Query:  137 EYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQ--VEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHAD-SYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQNDR 703
            + D  +++V++G  GVGKS L  +F +  F  +    I     +  +Q  ++ +     I +TA QE++ A+ + Y R   G LL++ VT  ++F+ + R+  ++    D     ++++GNK+DL++ R V+T +A     +  +S++E+SA + INV+ AF     ++ R I   + +S EP     ++ R
Sbjct:    4 DLDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIE---DSYRKQCVIDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFH----DLVRAIRNANKASVEPLRKKEKSRR 188          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQV--EGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKE-LRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +++V++G  GVGKS L  +  +  F  E    I     +  +QV  +  T    I +TA QE+Y A+ + Y R  +G L +Y +T  ++F+ ++ + ++ LR      + ++++GNK DL+  R V T +    A   G  F+ETSA   +NVE +F  ++ EI
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE---DSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREI 164          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 50/170 (29.41%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQ--VEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADS-YIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            +++V++G  GVGKS L  +  +  F  E    I     +  +Q  ++ + +   + +TA QE+Y A+   Y R   G LL+Y +    +F+ ++ +  ++    DS  + ++++GNK DL+  R V+ +D L+ A      F+ETSA + INVE AF  ++  I +  +K
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIE---DSYRKQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAK 171          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RASN_CHICK (GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.398e-13
Identity = 56/171 (32.75%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQV--EGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIM-MIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKK 655
            +++V++G  GVGKS L  +  +  F  E    I     +  +QV  +G T    I +TA QE+Y A+ + Y R   G L ++ +    +F +++ + ++++   DS  V M ++GNK DL   R V T+ A   A+  G+ F+ETSA     VE+AF T++ EI +   KK
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAQELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.398e-13
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  152 FEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQV--EGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKS 658
            +++V++G  GVGKS L  +  +  F  E    I     +  +QV  +G T    I +TA QE+Y A+ + Y R   G L ++ +    +FE++  + ++++   DS  + ++++GNK DL   R V T+ A   A   G+ F+ETSA     V++AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDLP-TRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS2_RHIRA2.578e-1328.65Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
GSP1_ASHGO2.578e-1329.22GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RASN_MOUSE3.367e-1333.14GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]
RASM_HUMAN3.367e-1329.82Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RASK_MELGA3.367e-1331.40GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RAS2_HYDMA3.367e-1327.60Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAS1_PHYPO3.367e-1331.10Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS1_CANAL3.367e-1329.41Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RASN_CHICK4.398e-1332.75GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1[more]
RASK_RIVMA4.398e-1331.40GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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