DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.396e-35
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.396e-35
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.396e-35
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.396e-35
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.130e-35
Identity = 80/185 (43.24%), Postives = 120/185 (64.86%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIY-RIISKKSLSSWEPA 679
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T + +G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL E+  +A   +  +++GNK+DL   + VAT+ A ++A+  G+ F+ETSA  A NV+ AF  + + I  R+ S+ + ++  PA
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPA 185          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.088e-35
Identity = 76/179 (42.46%), Postives = 121/179 (67.60%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            +  EYD LF+++LIG+SGVGKS LL RF+   +  +  S IG  F   T +++G+T+K QIW+TA QE++  IT++YYRG+ G +++YDVT   +F  V  WL+E+  +A S ++ +++GNK DLK  R V    A  +A+   + F+ETSAL++ NVE+AF T+  +I   +S+++L+
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.339e-35
Identity = 82/185 (44.32%), Postives = 118/185 (63.78%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAP 682
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL E+  +A   +  +++GNK+DL   R V+T  A  +AE  G+ F+ETSA  A NVE AF  + ++I     KK +++   AP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI-----KKRMANAPVAP 180          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.339e-35
Identity = 81/185 (43.78%), Postives = 119/185 (64.32%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI-YRIISKKSLSSWEPA 679
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T + +G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL E+  +A   +  +++GNK DL   R V+ +   + A+  G+ F+ETSA +A NVE AF T+  EI  R+ S+ + ++ +PA
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPA 185          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.339e-35
Identity = 78/171 (45.61%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       +G  F      ++G+ IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  ++  ++A   GL F+ETSA  A NVE AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 6.973e-35
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISK 652
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++ + IK QIW+TA QE + +IT +YYRG+ GALL+YD+T+  TF +++ WLK+ R +A+S + I++IGNK+D++  RAV+ ++   +A+  GL F+ETSA  A NVE AF    S+IY  I K
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQK 172          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_MACFA2.396e-3546.20Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN2.396e-3546.20Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK2.396e-3546.20Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA2.396e-3546.20Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
YPTM2_MAIZE3.130e-3543.24GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPT1_YEAST4.088e-3542.46GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
YPT1_PHYIN5.339e-3544.32Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RIC1_ORYSJ5.339e-3543.78Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB2A_RAT5.339e-3545.61Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_DICDI6.973e-3545.03Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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