DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.650e-34
Identity = 78/182 (42.86%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE 673
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   ++ NV +WL+E+  +A   +  +++GNK+DL   + V    A  +A+  G+ F+ETSA  A NVE AF T+ +EI + +   + S  E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.650e-34
Identity = 76/172 (44.19%), Postives = 111/172 (64.53%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRI 643
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T  ++G+ IK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +W++E++ +A   +  +++GNK DL   + V T  A  YA+  G+ F+ETSA  + NVE AF  + SEI ++
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKL 172          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.460e-34
Identity = 76/169 (44.97%), Postives = 109/169 (64.50%), Query Frame = 2
Query:  140 YD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRII 646
            Y  LF+ ++IGD+GVGKS LL +FT  +F       IG  F      ++ + IK QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA++ + IM++GNK DL H RAV+ ++   +A+  GL F+E SA  A NVE AF      IY+ I
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.460e-34
Identity = 77/169 (45.56%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL+E+  +A   +  +++GNK DL   + V    A  +A+  G+ F+ETSA  A NVE AF T+ +EI
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.460e-34
Identity = 77/182 (42.31%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWE 673
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  +T++YYRGA G +++YDVT   ++ NV +WL+E+  +A   +  +++GNK+DL   + V    A  +A+  G+ F+ETSA  A NVE AF T+ +EI + +   + S  E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.520e-34
Identity = 76/169 (44.97%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+ IK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL E+  +A   +  +++GNK+DL   + V    A ++A+  G+ F+ETSA  A NVE AF T+ +EI
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.520e-34
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKK 655
            + + YD LF+++LIGDSGVGK+ LL RF+   F     S IG  F   T +++G+ IK QIW+TA QE++  IT AYYRGA G + +YD+T   +F+N+  W++ + +HA S +  M++GNK D+   R V+ +     A   G+ F+ETSA  +INVE AF T+  +I   ++KK
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKK 176          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 7.709e-34
Identity = 76/169 (44.97%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL+E+  +A   +  +++GNK DL   + V    A  +A+  G+ F+ETSA  A NVE +F T+ +EI
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 7.709e-34
Identity = 76/169 (44.97%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL+E+  +A   +  +++GNK DL   + V    A  +A+  G+ F+ETSA  A NVE +F T+ +EI
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 7.709e-34
Identity = 76/169 (44.97%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 LEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEI 634
            +  EYD LF+++LIGDSGVGKS LL RF    +     S IG  F   T +++G+TIK QIW+TA QE++  IT++YYRGA G +++YDVT   +F NV +WL+E+  +A   +  +++GNK DL   + V    A  +A+  G+ F+ETSA  A NVE +F T+ +EI
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_MACFA2.650e-3442.86Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_DICDI2.650e-3444.19Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB2B_MAIZE3.460e-3444.97Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB1_DISOM3.460e-3445.56Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_RAT3.460e-3442.31Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
YPTC1_CHLRE4.520e-3444.97GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB8_DISOM4.520e-3442.61Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB1A_RAT7.709e-3444.97Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE7.709e-3444.97Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN7.709e-3444.97Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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