DY304955

Overview
NameDY304955
Unique NameDY304955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.509e-46
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = 1
Query:  367 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRTTSP 843
            P+VFFD+ +G    GRIVMEL +D+ PRTAENFRALCTG++G G       Y    FHRVIP FMCQ            +SIYG  F DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VV+ +E VGS  G+   P
Sbjct:   18 PRVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEP 169          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.509e-46
Identity = 93/153 (60.78%), Postives = 105/153 (68.63%), Query Frame = 1
Query:  376 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRT 834
            FFD+   GQP GRIV +LF DV P+TA NFRALCTGEKG G       Y GS+FHRVIP FM Q            +SIYG  F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVV+ +E +GS+ G T
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG-------YAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGAT 150          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.971e-46
Identity = 94/170 (55.29%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  364 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSX-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRTTSPS*SLNAVNC 870
            NP VFFD+T+GG+P GRI  ELF DV PRTAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              IYG+  FADENF+ KH  PG+LSMANAGP TNGSQFF+ T  T +LDGKHVVFG+VV+GMDVV+ +E   + +     P+  +    C
Sbjct:   11 NPLVFFDITLGGEPLGRITFELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQC 179          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.362e-46
Identity = 94/151 (62.25%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIE 807
            M NP+VFFD+ V G   GRIV+ELFAD  P+TAENFRALCTGEKGIGK S  PLHYKGS FHR+I GFMCQ            ESIYG+ F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E
Sbjct:    1 MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMME 151          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.477e-46
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1
Query:  349 QSKMPNPKVFFDMTVG---GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEK 810
            QSK+ + KV+FD++VG   G+ AGRIV+ L+ D  P+T ENFRALCTGEKG G       YKGS+FHRVI  FM Q            +S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VV+ IE+
Sbjct:   85 QSKITH-KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEE 233          

HSP 2 Score: 22.7126 bits (47), Expect = 4.477e-46
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  828 KDHKPVVIAECGQL 869
            +  K VVIA+CGQL
Sbjct:  241 RPRKKVVIADCGQL 254          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 7.490e-46
Identity = 90/155 (58.06%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  373 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRTT 837
            V+FD++  GQ  G+I  +L+ DV P+TAENFRALCTGEKG G       YKGS FHRVIP FM Q            +SIYG+ FADENFVK+H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+V+ IE  GS  G T+
Sbjct:    4 VYFDVSADGQKLGKITFKLYDDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPQFMLQGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATS 151          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.278e-45
Identity = 92/146 (63.01%), Postives = 105/146 (71.92%), Query Frame = 1
Query:  370 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIE 807
            KVFF +  G  P GR+V EL+ D+ P+TAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI  FM Q            ESIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+V+ +E
Sbjct:    8 KVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVE 152          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.669e-45
Identity = 95/176 (53.98%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  343 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRTTSPS*SLNAVNC 870
            I +++  NP+VFFD+ +GG  AGRIVM L ADV P+TAENFR LCT E+G G       YKG SFHRVIP FMCQ            +SIYG  F DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS  G   +PS  +   +C
Sbjct:  131 IEKAEKRNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSG---TPSQKIVIYSC 296          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.669e-45
Identity = 92/162 (56.79%), Postives = 110/162 (67.90%), Query Frame = 1
Query:  367 PKVFFDMTVGGQPAGRIVMEL----FADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGRTTS 840
            P+V+FD+ +G Q AGRI +EL    F DV P+TAENFRALCTGEKG+GK  KPL YKGS FHRVI  FM Q            ESIYG  F DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ IE + +   + T+
Sbjct:    8 PRVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTT 169          
BLAST of DY304955 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.669e-45
Identity = 93/162 (57.41%), Postives = 108/162 (66.67%), Query Frame = 1
Query:  346 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVQAIEKVGSSFGR 831
            N +     KVFFD  V G   GRI  EL+ +V P+TAENFRALCTGEKG G       YKG  FHR+IP FM Q            +SIYGS FADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+V+AIE  G++ G+
Sbjct:   15 NSASRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGK 169          
The following BLAST results are available for this feature:
BLAST of DY304955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIE_SCHJA1.509e-4656.60Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CYPH_SCHPO1.509e-4660.78Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIH_NEUCR1.971e-4655.29Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
CYP11_RHIOR3.362e-4662.25Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
CP20B_ARATH4.477e-4659.24Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIA_CANAL7.490e-4658.06Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPID_DICDI1.278e-4563.01Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIE_DROME1.669e-4553.98Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_ASPFU1.669e-4556.79Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPC_YEAST1.669e-4557.41Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BH05RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304955 ID=DY304955; Name=DY304955; organism=Citrus clementina; type=EST; length=1120bp
TGCCGAATTCGGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCAT
TAGCAACCACTTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGC
CCCACGTAGTCTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTT
ATTAGTTTCCACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACAT
CGTTGTTCCGGGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGG
ATGTCCATGCTAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCA
CGAGGATCAGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCA
ATCAAAAATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTC
AGCCCGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGA
ACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAA
GTCCGGCAAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCC
CCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGA
GGCGAATCAATCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAA
GCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCA
ACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGG
AAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCCAGGC
CATCGAGAAAGTGGGGTCCAGCTTCGGAAGGACCACAAGCCCGTCGTGAT
CGCTGAATGCGGTCAATTGTCTTAAATTTGATCATGATAATGGATCGCAT
CACCCGAACCGTCCGATCGCGATCGTGATGGTGATTATGTTATCTATATT
AAAGTGGCCGTGGCCTGAGGACTTTTAATCTTTACCTAATTTTCCCGGCT
TGTACTTGGTCGGGGTGGGAACGGGCCCCCGGGGGGTGGTTCTGAAGGAA
AGGGTTTTTTTTGTCTTTCCTAAGAAACCTCCCTTTTTAAAAAAAAAAGG
GGCCTTTTCTTTGTTATATT
back to top