DY305004

Overview
NameDY305004
Unique NameDY305004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1106
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.228e-20
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = -1
Query:  642 IFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 989
            +F+ V   A ISGGH+ PA      +G   SL++A++Y VAQ LG++  C  +K          GG   GA  L+ G      +  EI+ TF LVYTV+ +A DPK+      + V+AP+
Sbjct:   69 LFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPI 177          

HSP 2 Score: 55.4546 bits (132), Expect = 5.228e-20
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = -2
Query:  452 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 637
            IGF V    LA     G  +NPA SFG AV+      WD+ W++W+GPF+GA +AA  +  I
Sbjct:  179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.149e-19
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = -2
Query:  449 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 640
            P+GF++ + HL  IP TG G+NPARSF  AVI    + + + W+FW GP +GA +AA  ++  L
Sbjct:  163 PVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          

HSP 2 Score: 54.299 bits (129), Expect = 1.149e-19
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = -1
Query:  639 AWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 1010
            A AFG     LV     +SGGHI PA  +  +L  + SL RAL Y++AQ LGA+ G G +     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP
Sbjct:   45 ALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAV-RGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALP 163          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.531e-19
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  654 GVAIWAFAWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG----LGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 1031
            G+   A A AFG  +F+ V   A ISGGH+ PA     +LG   +L+R +LY +AQ LG++  C F+ +F         GG    A G + G G    L  EI+ TF LVYTV+ +A DPK  +  +  P+
Sbjct:   58 GLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAAC-FLLSFAT-------GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPI 178          

HSP 2 Score: 46.595 bits (109), Expect = 2.531e-19
Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = -2
Query:  452 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 637
            IGF V    LA    +G  +NPA +FG AV+      W + W++W GP IG  +A   + ++
Sbjct:  180 IGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLIGGGLAGIIYDFV 238          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.418e-19
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  651 FAWAFGGMIFILVYCTAG-ISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYY-NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVL 1013
            FA A      + V  +AG ISGGH+ PA  +  +LG   S+ RA LY + Q L +   C     F  SY     G   + LA G +   G+  EII TF L++TV++   DPK+ + D   P+L
Sbjct:   54 FAVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAAC-----FLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLL 172          

HSP 2 Score: 55.0694 bits (131), Expect = 9.418e-19
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = -2
Query:  449 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 634
            GF V    LA    +G  +NPARSFG A++      W D W++WVGP IG  +A F ++ +L
Sbjct:  174 GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.224e-18
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = -1
Query:  642 IFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 989
            +F+ V   A ISGGH+ PA      +G   SL++AL+Y VAQ LG++  C  +K          GG   GA  L+ G      +  E++ TF LVYTV+ +A DPK+      + V+AP+
Sbjct:   69 LFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPI 177          

HSP 2 Score: 51.2174 bits (121), Expect = 1.224e-18
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = -2
Query:  452 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 637
            IGF V    LA     G  +NPA SFG AV+      W++ W++WVGP  GA +AA  +  I
Sbjct:  179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVYWVGPLAGAAIAALVYDII 237          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.590e-18
Identity = 38/113 (33.63%), Postives = 54/113 (47.79%), Query Frame = -1
Query:  672 AWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 1010
            A AFG  +  LV     ISG H+ PA     ++G + SL+RA+ YM AQ LGA+ G   + +   +   R     N L  G + G     EI  T   V  +F+  D +R+ R
Sbjct:   45 ALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAV-RGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGR 156          

HSP 2 Score: 55.0694 bits (131), Expect = 1.590e-18
Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  449 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 637
            +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IG  +A+  + ++L
Sbjct:  164 VGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.592e-18
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = -1
Query:  642 IFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 989
            +F+ V   A +SGGH+ PA      +G   +L+RA+LY +AQ LGA+  C  +K             A  L+ G      +  EI+ TF LVYTV+ +A DPK+      + ++APL
Sbjct:   69 LFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMET----AAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPL 177          

HSP 2 Score: 49.6766 bits (117), Expect = 1.592e-18
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = -2
Query:  452 GTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 589
            G  +NPA SFG AV+      W + W++WVGPFIGA +AA  +  I
Sbjct:  195 GASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.593e-18
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  642 GVAIWAFAWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 1031
            G+   + A AF   +F+ V   A ISGGH+ PA      +G   +L+R ++Y++AQ LG+I     +     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+
Sbjct:   57 GLISASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPI 176          

HSP 2 Score: 48.1358 bits (113), Expect = 1.593e-18
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = -2
Query:  452 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 637
            IGF V    L     TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:  178 IGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.593e-18
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  642 GVAIWAFAWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 1031
            G+   A A AF   +F+ V   A +SGGH+ PA  +   +G   +++  L Y +AQCLG+   C  +K       N      + +A G +   G+  EII TF LVYTV+ +A DPK+ +    + V+AP+
Sbjct:   55 GLVAVAVAHAFA--LFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVT----NGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPI 175          

HSP 2 Score: 49.2914 bits (116), Expect = 1.593e-18
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = -2
Query:  461 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 637
            IGF V    LA  P +G  +NPARSFG AV       +   WI+W GP IG  +A F +
Sbjct:  177 IGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIY 232          
BLAST of DY305004 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.067e-18
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = -1
Query:  672 AWAFGGMIFILVYCTAGISGGHIKPACDIRTVLGRKGSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 1010
            A AFG  +  LV     ISG H+ PA     ++G + SL+RA+ YMVAQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D +R+ R
Sbjct:   45 ALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156          

HSP 2 Score: 54.6842 bits (130), Expect = 2.067e-18
Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  449 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 637
            +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IGA + +  + ++L
Sbjct:  164 VGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of DY305004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
TIP12_ORYSJ5.228e-2036.67Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_CHICK1.149e-1945.31Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP12_ARATH2.531e-1938.17Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP41_ARATH9.418e-1936.29Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP12_MAIZE1.224e-1836.67Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_RABIT1.590e-1833.63Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
TIP13_ARATH1.592e-1835.04Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP1_MEDTR1.593e-1833.59Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP_ANTMA1.593e-1834.35Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
MIP_BOVIN2.067e-1834.51Lens fiber major intrinsic protein OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC10RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305004 ID=DY305004; Name=DY305004; organism=Citrus clementina; type=EST; length=1106bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATA
CCTGTTGTAATATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAGA
TTGCACCCAAGCACTGTGCTACCATGTACAAAAGAGCTCGGATGAGCGAC
CCCTTGCGCCCCAAGACAGTCCGAATGTCACAAGCCGGTTTGATATGTCC
ACCAGAAATACCGGCTGTGCAGTAAACCAGAATGAAGATCATGCCACCAA
AGGCCCAAGCGAATGCCCAAATGGCCACCCCAACACACCTGGTTCGGTAT
TCCAGTTTGGGAATAATCCTGGGCTTCCTGGACCCCAACCACCGTTCAAA
AAAGGG
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