DY305187

Overview
NameDY305187
Unique NameDY305187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1232
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.209e-15
Identity = 79/282 (28.01%), Postives = 132/282 (46.81%), Query Frame = 1
Query:  136 VQYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQ----QDNKVVDL--DPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGY--NTPVKESFSRFMDEKGSFKLSS-HSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVY-ESGPD----MN-PILLELAKVDYNIVQAI 903
            V + +  S ++    D  + RR  ++   +W  D+IQSL + Y   SY  + ++L  +V  +      +D +++    D + +L ++DN+ RLG+  HF++EIK  LD +++    K            L +TAL FRILR +GY  ++ V E F     EKG F  S+  ++E                    +  +A  F+  YL E +    +     E     +++ LE      M RLE R +IDV  E+  D    MN   LLE+AK+++NI  ++
Sbjct:   45 VTHSLRMSLSTAVSDDHGVQRRIVEFHSNLWDDDFIQSLSTPYGAPSYRERADRLIVEVKGIFTSISAEDGELITPLNDLIQRLLMVDNVERLGIDRHFKNEIKAALDYVYSYWNEKGIGSGSDSGVADLNSTALGFRILRLHGYSVSSDVLEHFKE-EKEKGQFVCSAIQTEEEIKSVLNLFRASLIAFPGEKVMEEAEIFSKIYLKEALQNIAVSSLSRE-----IEYVLEDGWQTNMPRLETRNYIDVLGENDRDETLYMNMEKLLEIAKLEFNIFHSL 320          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.062e-15
Identity = 60/210 (28.57%), Postives = 103/210 (49.05%), Query Frame = 1
Query:  283 RQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK-----NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQ 897
            R+++ LK +V  +L       D     ++ LI  L  LG+++HFE+EIK  L+    K        K L   ++ FR+ R YG+N P    F RF  + G F+  S +++ KG+                I  +A++FT+++L   +A          ++  L+++ L LP  W M  + AR +I  YE   D + +LL LAK+++ ++Q
Sbjct:   41 REIDILKPEVMELLSSQGD--DETSKRKVLLIQLLLSLGLAFHFENEIKNILEHAFRKIDDITGDEKDLSTISIMFRVFRTYGHNLP-SSVFKRFTGDDGKFQ-QSLTEDAKGILSLYEAAHLGTTT-DYILDEALKFTSSHLKSLLAGGTCRP----HILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDHDKMLLRLAKLNFKLLQ 241          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.593e-15
Identity = 74/253 (29.25%), Postives = 115/253 (45.45%), Query Frame = 1
Query:  349 LDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECK-GMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*KGSQICVKVGGGKQDWGENLNFCKKQI-KGKFSSGTRGGKYS 1032
            +D L +L L+DN+  LG+  HF+ EIK  LD ++   + +            L  TAL  R LR +GYN    +  + F DE G F  S+     +                      DA +F   YL E +A   I  N    L   +++ +E P H  + RLEAR +ID Y+             P + N   LELAK+D+NIVQ++H +  ++  +    K+    ++NF + ++ +  FSS T   +YS
Sbjct:  350 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVS-SDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALAT-KISTNTK--LFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTR--WWKESGMADINFTRHRVAEVYFSSATFEPEYS 596          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.888e-14
Identity = 72/253 (28.46%), Postives = 115/253 (45.45%), Query Frame = 1
Query:  349 LDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECK-GMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*KGSQICVKVGGGKQDWGENLNFCKKQI-KGKFSSGTRGGKYS 1032
            +D L +L L+DN+  LG+  HF+ EIK  LD ++   + +            L  TAL  R LR +GY+    +  + F DE G F  S+     +                      DA +F   YL + +A   I  N   Y    +++ +E P H  + RLEAR +ID Y+             P + N   LELAK+D+NIVQ++H +  ++  +    K+    ++NF + ++ +  FSS T   +YS
Sbjct:  350 IDLLERLSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVS-SDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDEGAMDDARKFAEPYLRDALAT-KISTNTKLY--KEIEYVVEYPWHMSIPRLEARSYIDSYDDDYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTR--WWKESGMADINFTRHRVAEVYFSSATFEPEYS 596          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.078e-14
Identity = 59/226 (26.11%), Postives = 111/226 (49.12%), Query Frame = 1
Query:  271 ESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK-----NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*KGSQICVK 933
            ++  R+++ +K +V  +L   +K  D     ++ LI +L  LG+++HFE+EIK  L+    +          L   ++ FR+ R YG+N P    F RF  + G F+ S  +++ KG+                I  +A+ FT+++L   +    +      ++  L+++ L LP  W M  + AR +I  YE   D + +LL LAK+++ ++Q  + K  +  +K
Sbjct:   37 DAITREIDIIKPEVRKLLS--SKGDDETSKRKVLLIQSLLSLGLAFHFENEIKDILEDAFRRIDDITGDENDLSTISIMFRVFRTYGHNLP-SSVFKRFTGDDGKFERSL-TEDAKGILSLYEAAHLGTTT-DYILDEALEFTSSHLKSLL----VGGMCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDHDKMLLRLAKLNFKLLQLHYIKELKTFIK 253          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.662e-14
Identity = 65/214 (30.37%), Postives = 95/214 (44.39%), Query Frame = 1
Query:  349 LDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK-----------NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSS-HSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDK--NDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDM--------------NPILLELAKVDYNIVQAIH 906
            +D L +L ++DN+ RLG+  HFE EIK  LD ++             N    L  TAL FR+LR + YN      F  F D  G F  S+   ++                   +I  +A  F T YL E + K +     N+ + L   +K+AL+   H  + R+EA+ +  VY   PD               N   LEL K+D+NI+Q+IH
Sbjct:  296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVS-PAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIH 506          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.477e-13
Identity = 71/261 (27.20%), Postives = 112/261 (42.91%), Query Frame = 1
Query:  211 YGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-----------KSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTL-----VKHALELPLHWRMRRLEARWFIDVYESGPDM-------------NPILLELAKVDYNIVQAIH 906
            + P+  +F ++Q+ DS          LE L+  V         V  +D    + ++D L RLG+S +FE+EIK  LD +H   T+           + +  TA+ FR+LRQ+GY     + F  F  E   F     S++                    I ++A  F+  YL E   K + ++  D+++        +  ALE+P +  + R+E R++ID Y    D+             N   LELAK DYN  QA H
Sbjct:  288 FSPSSTAFAFMQTRDSNC--------LEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSA-DVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLE---KREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQH 536          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.291e-13
Identity = 71/253 (28.06%), Postives = 114/253 (45.06%), Query Frame = 1
Query:  349 LDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECK-GMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*KGSQICVKVGGGKQDWGENLNFCKKQI-KGKFSSGTRGGKYS 1032
            +D L +L L+DN+  LG+  HF+ EIK  LD ++   + +            L  TAL  R LR +GY+    +  + F DE G F  S+     +                      DA +F   YL + +A   I  N    L   +++ +E P H  + R EAR +ID Y+             P + N   LELAK+D+NIVQ++H +  ++  +    K+    ++NF + ++ +  FSS T   +YS
Sbjct:  350 IDLLERLSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVS-SDVLNNFKDENGRFFSSAGQTHVELRSVVILFRASDLAFPDEGAMDDARKFAEPYLRDALAT-KISTNTK--LFKEIEYVVEYPWHMSIPRSEARSYIDSYDDDYVWERKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTR--WWKESGMADINFTRHRVAEVYFSSATFEPEYS 596          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 67/218 (30.73%), Postives = 100/218 (45.87%), Query Frame = 1
Query:  349 LDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK------------NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSS-IFRDAIRFTTAYLXEWVAKHD-IDK-NDDEYLCTLVKHALELPLHWRMRRLEARWFID------------VYESGPDMNPILLELAKVDYNIVQAIH*KGSQ 921
            LD   +L  +D + RLG+  +F+ EIK +LD ++              N    +  TA+  RILR +GYN    +    F DEKG F   +   +                     I  +A  FTT +L   +AK++  DK    + L   V++A++ P H  M RLEAR +I+            VY+     N   LELAK+D+N+VQA+H K +Q
Sbjct:  353 LDLFERLWAVDTVERLGIDRYFKKEIKESLDYVYRYWDAERGVGWARCNPIPDVDDTAMGLRILRLHGYNVS-SDVLENFRDEKGDFFCFAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQ 569          
BLAST of DY305187 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 1
Query:  283 RQLEKLKEQVSAMLQQDNKVVDLDPLHQLDL-IDNLHRLGVSYHFEDEIKRTLDRIHNK------NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQ 897
            R++E LK +V   +   +   D D + +  L I  L  LG+SYHFE EI+ +L     K      + NK L+  +  FR+ R YGY     + F  F  + G FK  S  ++ KGM                I  +A+ FT  +L          +    ++  L+++AL +P H  ++ L AR +I  YE   D +  LL+LAK+++  +Q
Sbjct:   42 REIEVLKPKVRENIFVSSST-DKDAMKKTILSIHFLDSLGLSYHFEKEIEESLKHAFEKIEDLIADENK-LHTISTIFRVFRTYGYYMS-SDVFKIFKGDDGKFK-ESLIEDVKGMLSFYEAVHFGTTT-DHILDEALSFTLNHLESLATGR---RASPPHISKLIQNALHIPQHRNIQALVAREYISFYEHEEDHDETLLKLAKLNFKFLQ 245          
The following BLAST results are available for this feature:
BLAST of DY305187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TPSD9_ABIGR1.209e-1528.01Terpinolene synthase, chloroplastic OS=Abies grand... [more]
GBIS1_ARATH2.062e-1528.57(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
TASY_TAXBR4.593e-1529.25Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA3.888e-1428.46Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
GBIS2_ARATH5.078e-1426.11(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
TPSD1_ABIGR8.662e-1430.37Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
KSA_ARATH1.477e-1327.20Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
TASY_TAXCH3.291e-1328.06Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TPSD1_GINBI6.207e-1230.73Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
BARS_ARATH5.255e-1129.25Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DD01RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305187 ID=DY305187; Name=DY305187; organism=Citrus clementina; type=EST; length=1232bp
GATAGAATCCTTGAAATTATATTCTAAGTCATGGCTCTTAATCTGCTATC
TTCACTACCTGCGGTATGCAATTTCACCAGATTATCATTACCATTATCAA
GCAAAGTTAATGGCTTTGTTCCTCCTATTACTCGAGTCCAATATCCCATG
GCTGCATCCACTACTTCTATTAAGCCTGTCGATCAAACCATTATTAGGCG
ATCTGCCGATTACGGGCCAACCATTTGGAGTTTTGATTATATTCAATCAC
TTGACAGTAAATATAAGGGAGAATCGTATGCCAGACAATTGGAAAAGCTG
AAGGAACAAGTAAGCGCGATGCTACAGCAGGATAATAAAGTGGTGGATTT
GGATCCTTTACATCAACTTGACCTCATCGATAATCTGCACAGACTTGGAG
TATCTTATCACTTTGAGGATGAAATAAAAAGAACTTTGGATAGGATACAC
AACAAGAATACTAATAAAAGTTTATATGCCACAGCACTCAAATTTAGAAT
CCTAAGGCAATATGGTTACAATACACCTGTAAAAGAAAGTTTTTCACGTT
TCATGGATGAGAAGGGGAGCTTTAAGTTATCAAGCCACAGTGACGAATGC
AAAGGAATGTTAGCTCTGTATGAAGCTGCATACCTCCTGGTAGAAGAAGA
AAGCAGTATCTTTCGTGACGCTATAAGGTTCACCACCGCATATCTCANAG
AATGGGTGGCCAAGCATGATATTGACAAAAATGATGATGAATATCTTTGT
ACATTAGTGAAACATGCTTTGGAACTTCCACTACATTGGAGGATGCGAAG
ATTGGAGGCAAGGTGGTTCATCGATGTATACGAAAGTGGACCAGACATGA
ACCCTATCTTGCTCGAGCTTGCTAAAGTTGACTATAATATTGTGCAGGCA
ATACACTAAAAAGGATCTCAAATATGTGTCAAAGTTGGTGGAGGAAAACA
AGACTGGGGGGAGAATTTAAATTTTTGCAAAAAACAAATTAAGGGAAAAT
TTTCTTCCGGGACCCGGGGGGGAAAATATTCCAAACCTCCTTTTGGGAAT
TTTGGAAAAAAGGAAGGCCGGCAAAGGGTTTAATTGGTCTTTTAAAATTT
AAAACCAATGGAAGGTTTTATAGAAGGTCTAATGGGGAACCCTTTGGGAA
AAAAAAATTTTGGACCCTTTTTTTCCCCTGGGAAGCGCACAATTTTAAAA
AAAAAAATACACAGGTGTGAAAAACTAAAAAA
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