DY305223

Overview
NameDY305223
Unique NameDY305223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305223 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 2.607e-79
Identity = 152/227 (66.96%), Postives = 175/227 (77.09%), Query Frame = 1
Query:  331 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISRI*RKACLKRSPRLASATGTRYSGSLTPVGPQSGTKWSLNWGLKGKKLKATPQVV 1011
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++S+   KA ++    L  +          P GP    +     GLK +K+KAT +V+
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATREVL 227          
BLAST of DY305223 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 8.385e-78
Identity = 154/255 (60.39%), Postives = 182/255 (71.37%), Query Frame = 1
Query:  247 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISRI*RKACLKRSPRLASATGTRYSGSLTPVGPQSGTKWSLNWGLKGKKLKATPQVV 1011
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K VP +IS+    A  K    L  +          P GP    +      LK +K+ AT  V+
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIFWIAHPGGPAILDQVEQKVNLKPEKMNATRDVL 255          
BLAST of DY305223 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.798e-65
Identity = 131/208 (62.98%), Postives = 154/208 (74.04%), Query Frame = 1
Query:  388 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISRI*RKACLKRSPRLASATGTRYSGSLTPVGPQSGTKWSLNWGLKGKKLKATPQVV 1011
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++S+   KA ++    L  +          P GP    +      LK +K+KAT +V+
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVL 207          
BLAST of DY305223 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.738e-51
Identity = 109/174 (62.64%), Postives = 124/174 (71.26%), Query Frame = 1
Query:  490 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISRI*RKACLKRSPRLASATGTRYSGSLTPVGPQSGTKWSLNWGLKGKKLKATPQVV 1011
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLIS+   K+  +    +  +          P GP    +      LK +KL+AT QV+
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVL 174          
BLAST of DY305223 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.717e-22
Identity = 73/268 (27.24%), Postives = 130/268 (48.51%), Query Frame = 1
Query:   40 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLI 843
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVI 3038          
The following BLAST results are available for this feature:
BLAST of DY305223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS6_MEDSA2.607e-7966.96Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
THS2_ARAHY8.385e-7860.39Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS7_MEDSA2.798e-6562.98Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO8.738e-5162.64Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.717e-2227.24Probable polyketide synthase 1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2DH10RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305223 ID=DY305223; Name=DY305223; organism=Citrus clementina; type=EST; length=1218bp
GTAAGGGTTCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCA
GCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTG
CCCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACA
AAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGA
CAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGA
AGGAAAACCCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGT
CAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTAC
AAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCA
TCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTC
ACCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCA
ACAAGGATGTTTCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGG
CTGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACG
GCGGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGG
CCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATC
CTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAG
ACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGT
CGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTTGATCTCAAGAA
TATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCAGCGACT
GGAACTCGATATTCTGGATCGCTCACCCCCGTGGGCCCGCAATCTGGGAC
CAAGTGGAGTCTAAACTGGGGCCTCAAAGGGAAAAAGCTGAAGGCCACCC
CTCAAGTGGTTGAAGGGATACGGGAAACTGGTCAGCCGCTGGGGTTCTGG
TCCACCCTTGAACAAAAATGAAAAAAAAAATTTTGGTTGGAGGAAACCCA
AAAACCCCCCCCCCGGGAAAAGGGGGCTTTGGAATTGGGGGGTGTGGGCG
GGGTTTTTGGGGGTTTTCTGGGGGCCCCCGGGGGGGGCCCCCCCCCCCCC
CTCAAGAAGAAAACAACC
back to top