DY305230

Overview
NameDY305230
Unique NameDY305230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.955e-19
Identity = 65/201 (32.34%), Postives = 91/201 (45.27%), Query Frame = -3
Query:  449 GVAFFGHWLGPLGGMIFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGA-----NELADG-YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1033
            G+ F G  L   G  +  + +   G  GGHFNP  + GL   G++       Y VAQ LGA        V          GG       EL+ G Y+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    W+FWV P +GA + A   + +L
Sbjct:   33 GIGFLGVALA-FGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.016e-18
Identity = 69/206 (33.50%), Postives = 96/206 (46.60%), Query Frame = -3
Query:  443 GGGGVAFFGHWLGPLGGMIFFLVFGPAGFF--GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGC---GFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 1042
            GGGG    G     L   +   V   AG    GGH NP  T GL   G+++L R+ LY+ AQ LG+   C    F  V         G   + L  G     G+  E + TF L++ V+ +  DP+R+     V  + PL +G  V    LA  P +G  +NPARSFG A++      W D W++WVGP IG  +A   +  +  A
Sbjct:   47 GGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADS------GVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-----VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAG---VWADHWVYWVGPLIGGPLAGLVYDGLFMA 238          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.016e-18
Identity = 59/168 (35.12%), Postives = 81/168 (48.21%), Query Frame = -3
Query:  449 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 952
            G H NP  T   + G  VS +RA  Y+ AQ LGA  G             R     N L +    G  +  E+  T  LV  +F++TD +RS           L IGF+V + HL  I  TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L
Sbjct:   64 GAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.733e-18
Identity = 68/203 (33.50%), Postives = 90/203 (44.33%), Query Frame = -3
Query:  458 GGGGVAFFGHWLGPLGGMIFFLVFGPAGFF--GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGA------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQ 1042
            GGGG    G         +   V   AG    GGH NP  T GL  GG ++L R+ LY  AQ LG+   C                G  E    +    G+GA      E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARSFG A+   +   W D WI+WVGP IG  +A   ++
Sbjct:   46 GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALT---------GGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGE---WADHWIYWVGPLIGGPLAGLVYE 232          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.733e-18
Identity = 65/196 (33.16%), Postives = 96/196 (48.98%), Query Frame = -3
Query:  449 GPLGGMIFFLVFGPA---------GFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGA-NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1006
            GPL  +   L FG A            G H NP  TF  + G ++SL+RAF YM AQ LGA  G     ++  +     G  A N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IG  + +  + ++L
Sbjct:   37 GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAV--LYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.733e-18
Identity = 59/172 (34.30%), Postives = 82/172 (47.67%), Query Frame = -3
Query:  437 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 952
            G H NP  T   + G  VS +RA  Y+ AQ LGA  G             R     N L +    G  +  E+  T  LV  +F++TD +R            L IGF+V + HL  I  TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L  +A
Sbjct:   64 GAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLLFPSA 227          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.263e-18
Identity = 64/195 (32.82%), Postives = 93/195 (47.69%), Query Frame = -3
Query:  449 GPLGGMIFFLVFGPA---------GFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1006
            GPL  +   L FG A            G H NP  TF  + G ++SL+RA  YM AQ LGA  G         +   R     N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IG  +A+  + ++L
Sbjct:   37 GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAV-RGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.263e-18
Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = -3
Query:  449 GPLGGMIFFLVFGPA---------GFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGA-NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1006
            GPL  +   L FG A            G H NP  TF  + G ++SL+RA  YMVAQ LGA  G     ++  +     G  A N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IGA + +  + ++L
Sbjct:   37 GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAV--LYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.955e-18
Identity = 64/201 (31.84%), Postives = 90/201 (44.78%), Query Frame = -3
Query:  449 GVAFFGHWLGPLGGMIFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGA-----NELADG-YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1033
            G+ F G  L   G  +  + +   G  GGHFNP  +  L   G++       Y VAQ LGA        V          GG       EL+ G Y+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    W+FWV P +GA + A   + +L
Sbjct:   33 GIGFLGVALA-FGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.860e-18
Identity = 64/196 (32.65%), Postives = 96/196 (48.98%), Query Frame = -3
Query:  449 GPLGGMIFFLVFGPA---------GFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGA-NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 1006
            GPL  +   L FG A            G H NP  TF  + G ++SL+RAF Y+ AQ LGA  G     ++  +     G  A N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IG  + +  + ++L
Sbjct:   35 GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAV--LYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
The following BLAST results are available for this feature:
BLAST of DY305230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
AQPZ_BRUME5.955e-1932.34Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
TIP44_MAIZE1.016e-1833.50Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQP2_MOUSE1.016e-1835.12Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP43_ORYSJ1.733e-1833.50Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
MIP_CANFA1.733e-1833.16Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP2_RAT1.733e-1834.30Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_RABIT2.263e-1832.82Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_BOVIN2.263e-1833.67Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQPZ_BRUSU2.955e-1831.84Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
MIP_RAT3.860e-1832.65Lens fiber major intrinsic protein (Fragment) OS=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AB01RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305230 ID=DY305230; Name=DY305230; organism=Citrus clementina; type=EST; length=1113bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCC
AAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGA
GAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTC
CGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATAC
CTGTTGTAATATGATTTTTGGAAAACCCTTCCAAACCCACAACCACAGAA
TGCACCCAAGCCCTGTGCTACCATGTACAAAAAAGCTCGAATAAGCGACA
CTTTGCCCCCCCAGACCAATCCAAATGTCCAACCCGGGTTGAAATGTCCC
CCAAAAAACCCGGCTGGGCCAAAAACCAAAAAGAAAATCATGCCACCCAA
GGGCCCCAACCAATGCCCAAAAAAGGCCACACCCCCCCCCCCCGGATTAG
GATATTTCAATTTGGGAAATAATCTGGGCCTCTTTTATACCCCACCCCCA
GTCACAAAAAGGG
back to top